Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.9e-184 649.0 324 100.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.5e-98 362.1 381 58.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.2e-96 355.5 386 57.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 1.8e-78 297.0 381 48.3
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.2e-77 294.3 381 48.3
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.0e-77 293.5 378 48.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-75 287.7 370 49.5
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.9e-75 287.0 346 52.6
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.1e-75 285.8 345 51.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.0e-73 281.2 389 46.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.3e-73 280.0 384 46.4
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.6e-73 278.5 373 48.0
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-72 277.7 384 46.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.5e-72 277.3 385 46.0
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.5e-72 276.6 366 47.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.3e-72 276.2 382 46.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 7.3e-72 275.0 361 47.4
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.3e-72 275.0 388 45.9
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 9.5e-72 274.6 367 46.3
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 4.7e-71 272.3 379 47.8
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.1e-70 271.2 382 45.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.4e-70 270.8 330 49.1
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.3e-70 270.0 211 69.2
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.4e-69 265.8 364 46.7
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.4e-69 265.8 364 46.7
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-68 264.2 337 47.8
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 4.9e-68 262.3 378 45.0
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 6.4e-68 261.9 377 44.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.3e-68 261.5 330 48.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 8.3e-68 261.5 360 44.7
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.1e-67 261.2 372 43.5
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.4e-67 260.8 382 46.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.4e-67 260.0 365 44.4
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 7.1e-67 258.5 363 45.2
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.2e-66 257.7 366 44.3
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.6e-66 257.3 378 42.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.6e-66 257.3 378 42.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.7e-66 256.5 378 45.0
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.0e-66 255.4 377 44.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.0e-66 255.4 374 44.9
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-65 254.6 363 44.9
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.0e-65 254.6 372 44.6
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.7e-65 253.8 376 44.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.7e-65 253.8 382 42.4
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.3e-65 253.4 398 44.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.9e-65 252.7 366 43.2
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 5.1e-65 252.3 390 43.8
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.1e-65 252.3 380 43.7
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 8.6e-65 251.5 351 44.7
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.1e-64 251.1 326 48.8
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 3.3e-64 249.6 369 44.2
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.6e-64 248.8 364 44.5
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.1e-63 246.9 299 51.5
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.8e-63 246.5 342 46.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.8e-62 243.8 347 46.1
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.8e-61 238.8 366 43.2
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 9.9e-61 238.0 363 43.8
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.9e-60 236.5 361 43.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 8.4e-60 235.0 359 43.5
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 9.3e-59 231.5 367 41.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.2e-58 231.1 352 42.3
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.6e-58 230.7 365 40.8
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.7e-58 229.9 352 41.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 3.5e-58 229.6 327 47.1
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.6e-58 229.2 449 36.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.8e-58 228.4 353 41.1
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.3e-57 227.6 368 39.9
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.7e-57 227.3 316 45.3
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 5.1e-57 225.7 378 40.5
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.6e-57 225.3 396 40.9
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 8.7e-57 224.9 366 41.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.9e-56 223.8 327 45.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.9e-56 223.8 364 42.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.3e-56 223.0 364 42.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 5.6e-56 222.2 364 42.3
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.6e-56 222.2 330 46.1
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 5.6e-56 222.2 370 41.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 9.6e-56 221.5 369 42.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-55 220.7 368 42.1
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 2.4e-54 216.9 348 41.7
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.4e-54 216.9 345 41.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 2.4e-54 216.9 270 50.7
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.1e-54 216.5 425 36.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 5.3e-54 215.7 348 41.4
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 4.4e-53 212.6 368 38.6
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 5.8e-53 212.2 345 40.3
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.7e-52 210.7 386 39.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.4e-51 207.6 371 37.2
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.2e-51 206.5 370 38.9
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.2e-51 206.1 375 40.8
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.1e-50 203.8 324 42.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.1e-50 203.8 235 47.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 6.0e-50 202.2 382 38.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 6.0e-50 202.2 367 37.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.3e-49 200.3 374 40.1
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.9e-49 199.5 361 38.2
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.1e-48 198.0 418 34.9
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.9e-48 197.2 353 39.7
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.9e-48 197.2 365 38.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-47 193.7 328 40.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.4e-46 191.0 354 41.2
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 4.0e-46 189.5 368 38.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.3e-46 189.1 326 39.9
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 2.0e-45 187.2 370 38.4
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.2e-44 183.7 327 40.1
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.1e-43 181.4 211 49.8
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 5.1e-41 172.6 340 33.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 4.8e-39 166.0 335 36.7
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 8.1e-39 165.2 341 36.1
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 9.0e-38 161.8 331 36.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.5e-37 159.5 348 36.5
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.0e-36 158.3 185 47.6
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.3e-36 157.9 237 45.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.8e-36 156.4 357 35.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.2e-35 152.9 185 45.9
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 4.2e-35 152.9 303 38.3
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 5.5e-35 152.5 307 38.1
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-34 150.6 287 39.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 2.7e-34 150.2 314 33.8
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.3e-33 147.1 307 35.8
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 3.3e-32 143.3 129 54.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 7.4e-32 142.1 327 33.0
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.3e-31 141.4 198 44.9
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 5.5e-27 125.9 259 35.5
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 9.3e-27 125.2 138 54.3
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.1e-17 92.8 153 40.5
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.1e-16 91.7 153 39.9
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.2e-15 87.4 222 34.7
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.8e-15 87.0 333 28.2
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.2e-12 77.4 173 29.5
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.8e-12 76.6 160 31.2
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.4e-11 74.7 90 53.3
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 2.5e-11 73.9 332 25.3
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.2e-11 73.6 180 27.2
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 4.2e-11 73.2 282 26.6
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 5.5e-11 72.8 124 33.9
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.6e-10 71.2 88 53.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.1e-10 70.9 160 31.2
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 4.7e-10 69.7 94 42.6
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 62.4 149 29.5
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 62.4 149 29.5
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 62.4 149 29.5
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 62.4 149 29.5
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 7.4e-08 62.4 149 29.5
DCAR_007476 Daucus carota HOM05D001735 ORTHO05D001640 1.3e-07 61.6 287 25.8
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.7e-07 61.2 149 28.9
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.2e-07 60.8 146 28.8
TAR629G1382 Trochodendron aralioides HOM05D001735 ORTHO05D001640 6.3e-07 59.3 207 26.6
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 8.2e-07 58.9 149 28.9
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 1.8e-06 57.8 232 29.7
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.4e-06 57.4 96 44.8
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 3.1e-06 57.0 287 25.1
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 4.1e-06 56.6 302 25.8
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 5.3e-06 56.2 223 28.7
vmacro16652 Vaccinium macrocarpon HOM05D001735 ORTHO05D001640 5.3e-06 56.2 236 25.8
Peaxi162Scf00763g00035 Petunia axillaris HOM05D001735 ORTHO05D001640 7.0e-06 55.8 210 25.7
Cpa.g.sc4.106 Carica papaya HOM05D001735 ORTHO05D001640 9.1e-06 55.5 298 24.2


User provided reference genes

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