Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.2e-149 530.8 273 100.0
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 4.8e-125 451.4 272 86.0
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 4.5e-123 444.9 275 86.2
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.9e-121 439.5 278 85.3
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.8e-87 326.6 265 63.4
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.0e-83 313.2 253 62.5
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.5e-83 312.4 263 60.5
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 5.9e-83 311.6 251 62.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.0e-82 310.8 253 62.1
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 2.3e-82 309.7 252 59.9
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 5.0e-82 308.5 262 63.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 5.5e-81 305.1 254 64.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 9.5e-81 304.3 248 61.7
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 9.5e-81 304.3 251 61.4
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 9.5e-81 304.3 252 59.5
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.1e-80 303.1 248 61.7
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.3e-79 299.7 266 59.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 4.0e-79 298.9 267 61.0
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 6.8e-79 298.1 249 61.8
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.5e-78 297.0 264 60.6
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.5e-78 297.0 252 58.3
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 2.0e-78 296.6 251 61.4
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.0e-78 296.6 252 58.7
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.7e-78 295.0 264 60.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 5.7e-78 295.0 252 59.9
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 7.5e-78 294.7 253 60.9
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 7.5e-78 294.7 248 60.9
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.7e-77 293.5 252 59.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.7e-77 293.5 252 59.5
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.8e-77 292.7 243 60.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.7e-77 292.4 251 59.4
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-77 292.4 241 60.2
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-77 292.4 241 60.2
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.1e-76 290.8 254 61.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.8e-76 290.0 243 59.7
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.8e-76 290.0 225 64.0
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.4e-76 289.7 266 57.1
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.2e-76 289.3 261 57.9
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 7.0e-76 288.1 262 57.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 4.5e-75 285.4 250 60.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 5.9e-75 285.0 248 59.3
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.3e-74 283.1 265 57.0
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 5.0e-74 282.0 242 59.9
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.1e-73 280.8 246 58.9
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.5e-73 279.6 242 58.3
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 4.3e-73 278.9 244 56.6
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 5.6e-73 278.5 242 60.3
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 7.3e-73 278.1 262 56.5
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 7.3e-73 278.1 261 55.6
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 9.5e-73 277.7 262 55.3
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 9.5e-73 277.7 263 57.0
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.1e-72 276.6 242 59.9
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.1e-72 276.6 242 59.9
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 2.1e-72 276.6 243 59.3
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 2.1e-72 276.6 246 58.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.8e-72 276.2 242 59.5
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.6e-72 275.8 242 59.9
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.6e-72 275.8 242 59.9
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 6.1e-72 275.0 242 59.5
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 8.0e-72 274.6 258 55.8
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.0e-71 274.2 241 59.8
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.4e-71 273.9 243 60.1
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.8e-71 273.5 240 59.2
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.8e-71 273.5 262 56.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 3.1e-71 272.7 248 60.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 3.1e-71 272.7 247 59.5
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 4.0e-71 272.3 230 61.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 5.2e-71 271.9 241 59.8
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 6.8e-71 271.6 248 57.3
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.2e-70 270.8 262 56.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-70 270.4 267 54.7
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-70 270.4 267 54.7
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 4.4e-70 268.9 263 54.8
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 4.4e-70 268.9 241 58.9
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.4e-70 268.9 241 55.6
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.5e-70 268.1 239 60.7
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.9e-69 266.2 262 54.6
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 3.7e-69 265.8 262 54.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.7e-69 265.8 268 55.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 8.3e-69 264.6 269 53.2
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.4e-68 263.8 239 59.8
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.9e-68 263.5 252 56.3
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.4e-68 263.1 245 58.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 3.2e-68 262.7 250 55.6
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 3.2e-68 262.7 242 55.4
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 5.4e-68 261.9 243 57.6
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 7.0e-68 261.5 262 54.6
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.0e-68 261.5 207 66.2
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.6e-67 260.4 228 61.0
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 6.0e-67 258.5 249 56.6
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.0e-66 257.7 254 56.7
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.5e-65 253.8 269 53.9
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.9e-65 253.4 246 56.1
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 4.3e-65 252.3 252 54.8
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.6e-65 251.9 225 57.3
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.6e-64 249.2 225 56.4
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.2e-62 244.2 233 55.8
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 7.5e-62 241.5 246 52.0
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 9.8e-62 241.1 239 56.1
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 4.9e-61 238.8 256 50.4
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.1e-60 237.7 266 51.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.9e-60 236.9 216 54.6
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.9e-60 236.9 239 51.5
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.4e-60 235.3 241 54.8
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 2.1e-59 233.4 247 52.2
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.0e-58 231.1 227 55.9
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.5e-57 226.5 256 50.8
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.1e-56 223.4 234 54.7
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 4.7e-56 222.2 234 54.3
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.1e-56 221.5 204 57.8
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.8e-55 220.3 214 55.6
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 5.2e-55 218.8 245 51.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.5e-54 217.2 262 49.2
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.5e-54 214.9 215 55.8
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.9e-53 213.0 250 51.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 2.4e-52 209.9 229 50.7
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.2e-48 195.3 236 45.8
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.4e-47 194.1 241 47.3
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.2e-46 191.0 237 46.0
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.6e-43 180.6 134 63.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.4e-39 166.8 241 41.5
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.3e-34 151.0 127 55.9
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.9e-33 147.1 234 37.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.6e-32 144.1 185 46.5
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.1e-32 141.7 185 46.5
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.4e-31 141.0 176 44.9
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.5e-30 137.5 170 46.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 2.6e-30 136.7 229 36.7
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.4e-30 136.3 134 53.7
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.2e-29 133.7 237 35.9
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.4e-28 130.2 140 48.6
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.2e-27 127.9 159 48.4
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 3.5e-27 126.3 213 38.0
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 2.3e-26 123.6 232 34.1
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.0e-26 123.2 237 33.8
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 5.3e-23 112.5 244 32.8
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 7.1e-12 75.5 69 53.6
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.6e-11 72.8 81 53.1
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 4.3e-09 66.2 139 33.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.6e-08 64.3 71 50.7
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.6e-08 64.3 71 50.7
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.3e-08 62.4 175 26.9


User provided reference genes

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