Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.4e-117 426.4 228 100.0
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.2e-105 386.7 229 90.0
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.6e-105 386.3 229 90.0
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.7e-105 385.6 229 90.0
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.3e-103 378.6 227 87.7
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.9e-99 365.5 225 86.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.1e-93 345.5 225 80.0
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 7.1e-90 334.3 220 77.3
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 3.9e-88 328.6 230 74.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.9e-88 328.6 230 73.9
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.1e-88 328.2 228 75.0
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 8.7e-88 327.4 225 73.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.1e-87 327.0 226 75.2
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.5e-87 326.6 228 74.6
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.3e-87 325.1 228 74.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 5.7e-87 324.7 230 73.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 7.4e-87 324.3 225 74.7
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 7.4e-87 324.3 228 73.7
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 7.4e-87 324.3 228 74.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 9.6e-87 323.9 228 73.7
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.3e-86 323.6 225 76.4
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.6e-86 323.2 225 74.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.1e-86 322.8 234 72.2
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.1e-86 322.8 226 75.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.1e-86 322.8 226 74.3
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.8e-86 322.4 227 74.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.8e-86 322.4 228 74.6
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.8e-84 314.7 230 69.6
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.0e-83 313.9 230 70.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.8e-83 312.0 224 76.3
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.9e-83 311.6 220 75.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.5e-83 311.2 228 72.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-82 310.5 229 71.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.2e-82 308.9 227 70.9
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.2e-82 308.5 224 71.9
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 5.5e-82 308.1 223 73.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.5e-82 308.1 226 69.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.1e-82 307.8 224 71.4
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-81 306.6 226 69.5
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.5e-81 305.4 226 72.1
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 3.5e-81 305.4 226 68.6
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.6e-81 305.1 213 74.6
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.0e-80 303.9 226 68.6
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.0e-80 303.9 224 71.9
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.8e-80 303.1 225 71.6
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 8.7e-80 300.8 227 69.6
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.1e-79 300.4 220 70.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.5e-79 300.1 233 67.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.9e-79 299.7 225 69.3
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.7e-79 298.1 222 69.4
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 5.7e-79 298.1 225 69.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 5.7e-79 298.1 228 68.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.4e-79 297.7 230 68.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.3e-78 297.0 227 65.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.6e-78 296.6 239 66.1
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.2e-78 296.2 232 67.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.2e-78 296.2 223 68.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.8e-78 295.8 225 67.1
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.8e-78 295.8 219 71.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.7e-78 295.4 225 68.4
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.7e-78 295.4 224 67.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.7e-78 295.4 232 67.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 4.8e-78 295.0 227 66.1
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.8e-78 295.0 227 69.2
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 6.3e-78 294.7 227 66.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 6.3e-78 294.7 227 66.1
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-77 293.9 227 66.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-77 293.9 227 66.1
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-77 293.5 222 68.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.4e-77 293.5 227 66.1
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.8e-77 293.1 220 68.2
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.4e-77 292.7 223 66.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.1e-77 292.0 236 66.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.3e-77 291.6 231 68.0
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 5.3e-77 291.6 227 65.6
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 9.0e-77 290.8 236 66.5
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-76 290.4 228 68.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.5e-76 290.0 224 68.3
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.5e-76 290.0 225 68.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.9e-76 288.1 222 68.9
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.0e-75 287.3 225 68.0
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 2.9e-75 285.8 236 64.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.8e-75 285.4 224 67.0
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.8e-75 285.4 223 68.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 8.5e-75 284.3 215 69.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-74 283.9 224 67.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.4e-74 283.5 223 65.5
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.2e-74 282.3 218 66.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.5e-74 281.6 225 65.8
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 9.4e-74 280.8 223 65.9
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-73 280.0 227 63.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.1e-73 279.6 218 65.6
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.7e-73 279.3 225 66.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.4e-72 276.9 218 64.7
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-72 276.6 227 67.8
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.0e-72 275.8 230 63.9
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.7e-72 274.6 225 64.0
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.1e-71 273.9 239 62.8
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.7e-70 270.0 231 61.9
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 5.3e-69 265.0 224 63.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 5.9e-68 261.5 232 57.8
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.9e-67 259.2 278 55.4
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 6.5e-67 258.1 186 71.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.4e-66 256.9 259 57.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.4e-66 256.9 229 60.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 3.2e-66 255.8 223 62.3
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 7.2e-66 254.6 226 61.1
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.7e-65 252.7 229 59.4
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.3e-64 249.6 226 59.7
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.1e-63 247.3 233 57.1
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.4e-63 245.4 169 73.4
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 4.1e-61 238.8 163 74.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 3.5e-60 235.7 222 59.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-59 233.8 161 77.0
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.9e-59 232.6 245 49.8
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.8e-59 232.3 220 58.2
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.1e-58 230.7 175 70.3
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.2e-58 228.0 241 50.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.7e-57 225.3 221 57.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 8.0e-57 224.6 163 69.3
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.4e-56 223.8 159 74.2
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 6.3e-54 214.9 228 52.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.8e-53 213.4 170 65.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.0e-51 205.3 152 69.7
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.0e-51 205.3 141 75.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-49 200.3 225 53.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 3.1e-45 186.0 145 66.9
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.5e-44 182.2 223 48.0
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 5.0e-43 178.7 149 61.1
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 7.2e-42 174.9 206 50.0
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.8e-40 167.9 222 46.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 7.5e-39 164.9 222 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.8e-38 162.9 187 49.2
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 8.3e-38 161.4 113 71.7
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.1e-37 161.0 193 47.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.1e-37 161.0 113 72.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 7.7e-36 154.8 126 68.3
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.0e-35 154.5 232 43.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-35 153.7 113 69.9
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.0e-35 152.1 191 47.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 7.2e-34 148.3 184 48.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.1e-33 145.2 141 57.4
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.3e-32 143.3 145 53.8
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 2.2e-30 136.7 215 36.7
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 6.3e-30 135.2 222 37.8
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 2.9e-27 126.3 178 51.7
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.5e-26 123.2 228 38.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.1e-25 120.2 90 68.9
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.6e-25 119.4 181 40.9
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 8.0e-25 118.2 141 49.6
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.8e-24 117.1 97 61.9
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.0e-24 115.9 83 72.3
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.0e-24 115.9 83 72.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 3.2e-21 106.3 116 55.2
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.0e-21 105.1 172 41.3
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 9.2e-21 104.8 81 67.9
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.6e-20 104.0 139 45.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.5e-20 102.8 79 69.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 7.8e-20 101.7 106 52.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.3e-19 100.1 152 42.1
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.3e-18 95.9 58 84.5
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-17 93.2 95 55.8
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-17 92.8 205 35.1
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-17 92.8 205 35.1
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.6e-17 92.8 83 60.2
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 6.8e-16 88.6 68 67.6
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.5e-15 87.4 53 77.4
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 4.4e-15 85.9 52 76.9
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.8e-15 84.7 80 55.0
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-14 84.3 85 55.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.3e-14 84.3 53 75.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.3e-14 84.3 53 75.5
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-13 80.9 192 33.9
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.9e-13 80.5 75 60.0
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.9e-13 80.5 53 75.5
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.9e-13 80.5 72 58.3
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.7e-12 76.6 81 50.6
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 8.6e-11 71.6 53 71.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.3e-10 69.3 77 51.9
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 1.6e-09 67.4 131 38.9
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 2.2e-06 57.0 40 67.5
MD09G1147900 Malus domestica HOM05D003667 ORTHO05D248526 4.9e-06 55.8 43 67.4


User provided reference genes

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