Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.0e-112 408.7 232 100.0
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 6.2e-73 278.1 252 71.8
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.4e-72 276.9 252 71.8
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.9e-69 266.5 252 65.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.6e-63 246.1 255 62.0
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.9e-46 189.5 256 50.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.1e-44 183.3 265 50.2
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 9.6e-42 174.5 257 50.6
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-41 174.1 263 48.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.1e-40 171.0 276 45.3
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.0e-40 169.1 259 47.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.0e-40 169.1 251 49.8
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 5.3e-40 168.7 259 48.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.5e-39 167.2 264 46.2
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.6e-39 166.4 261 48.3
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.4e-39 166.0 263 46.8
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.4e-39 166.0 262 46.9
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 4.5e-39 165.6 252 48.0
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 9.9e-39 164.5 267 47.6
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.3e-38 164.1 265 46.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.2e-38 163.3 268 47.8
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.9e-38 162.9 265 46.8
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.4e-38 161.8 263 45.6
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-37 161.0 263 47.9
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-37 160.6 255 47.1
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.2e-37 159.1 263 46.8
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 5.5e-37 158.7 267 47.2
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 7.1e-37 158.3 259 46.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.6e-36 157.1 267 46.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.6e-36 157.1 262 44.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.1e-36 156.8 253 47.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.6e-36 155.6 254 46.5
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 4.6e-36 155.6 267 44.9
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 7.9e-36 154.8 260 44.2
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.3e-35 154.1 265 46.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.8e-35 153.7 268 45.5
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.8e-35 153.7 261 46.4
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 3.0e-35 152.9 253 46.6
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.9e-35 152.5 282 42.2
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.9e-35 152.5 259 43.6
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.9e-35 152.5 267 44.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 5.1e-35 152.1 261 46.0
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 5.1e-35 152.1 253 46.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 6.7e-35 151.8 265 44.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-34 150.6 249 45.8
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-34 150.6 249 45.8
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.9e-34 150.2 265 45.3
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.5e-34 149.8 263 45.2
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 5.6e-34 148.7 272 45.6
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 5.6e-34 148.7 257 44.0
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.6e-34 148.7 242 46.7
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 7.4e-34 148.3 272 45.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 7.4e-34 148.3 265 44.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-33 147.5 256 43.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-33 146.7 252 44.8
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-33 146.7 252 44.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.1e-33 146.7 247 45.7
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 3.7e-33 146.0 253 44.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 3.7e-33 146.0 257 42.8
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.8e-33 145.6 259 45.2
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.8e-33 145.6 247 44.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.8e-33 145.6 248 45.2
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-33 144.8 247 44.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-33 144.8 249 45.0
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-33 144.8 249 45.0
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 8.2e-33 144.8 261 45.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.8e-32 143.7 261 45.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.3e-32 142.1 249 44.6
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 5.3e-32 142.1 291 41.9
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 6.9e-32 141.7 265 43.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.2e-31 141.0 266 43.6
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-31 141.0 255 42.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-31 141.0 255 42.0
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.5e-31 140.6 269 42.0
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.0e-31 140.2 259 44.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.5e-31 139.0 258 43.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 7.6e-31 138.3 258 42.2
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 7.6e-31 138.3 258 43.4
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.0e-30 137.9 179 52.0
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-30 137.5 256 44.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-30 137.5 256 44.1
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 2.2e-30 136.7 248 44.8
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.2e-30 136.7 256 43.4
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 2.2e-30 136.7 248 44.8
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.2e-30 136.7 250 42.0
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.9e-30 136.3 267 42.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.9e-30 136.3 259 42.1
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.9e-30 136.3 251 42.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.8e-30 136.0 261 42.5
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 4.9e-30 135.6 246 45.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.9e-30 135.6 260 41.2
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 6.5e-30 135.2 266 42.1
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 6.5e-30 135.2 253 44.3
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 8.4e-30 134.8 263 40.7
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.9e-29 133.7 254 42.1
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.2e-29 132.9 260 42.3
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 7.1e-29 131.7 283 39.6
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 7.1e-29 131.7 260 42.3
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-28 131.0 267 42.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.6e-28 130.6 243 43.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.6e-28 130.6 221 42.5
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.1e-28 130.2 266 42.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.7e-28 129.8 259 41.7
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.5e-28 129.4 266 42.1
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-27 127.1 160 55.0
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.8e-27 127.1 259 40.2
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.3e-27 126.7 253 42.3
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-27 126.7 165 53.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-27 126.3 258 43.0
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.7e-27 125.2 268 40.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 8.7e-27 124.8 263 40.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 8.7e-27 124.8 254 41.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-26 124.0 155 54.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.5e-26 123.2 170 49.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 4.3e-26 122.5 181 49.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-25 120.9 277 39.4
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.2e-25 120.2 234 41.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.7e-25 119.4 306 38.9
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 4.8e-25 119.0 159 50.3
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.8e-25 119.0 237 43.9
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 6.3e-25 118.6 260 39.6
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.4e-24 117.5 232 42.7
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.1e-24 116.3 242 40.1
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 5.3e-24 115.5 244 39.3
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 5.3e-24 115.5 250 40.4
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 6.9e-24 115.2 242 39.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 9.0e-24 114.8 207 45.4
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 9.0e-24 114.8 197 42.1
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 9.0e-24 114.8 246 39.8
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 9.0e-24 114.8 243 41.6
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.2e-23 114.4 244 42.2
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.5e-23 114.0 242 41.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.5e-23 114.0 266 37.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.4e-23 112.8 240 37.9
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 3.4e-23 112.8 198 41.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.4e-23 112.8 246 39.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.3e-22 110.9 248 39.5
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.2e-22 110.2 262 39.3
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.5e-22 108.6 261 37.9
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 8.5e-22 108.2 180 45.0
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.1e-21 107.8 265 39.2
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.5e-21 106.7 243 38.3
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.2e-21 106.3 235 39.6
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.2e-21 105.9 254 40.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.2e-21 105.1 244 40.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 6.1e-20 102.1 147 47.6
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-19 100.9 246 37.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.3e-19 100.1 190 38.4
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 3.9e-19 99.4 252 38.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.1e-19 99.0 241 35.7
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 6.7e-19 98.6 241 35.7
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 6.7e-19 98.6 230 37.0
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 8.8e-19 98.2 267 36.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.8e-19 98.2 244 36.5
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.5e-18 96.7 242 36.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.7e-18 95.5 245 35.5
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 9.7e-18 94.7 272 35.3
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.7e-17 94.0 111 56.8
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 6.3e-17 92.0 245 35.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-16 90.9 227 35.7
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 6.5e-14 82.0 97 56.7
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.9e-13 80.5 238 36.1
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.6e-12 76.3 69 68.1
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.0e-11 74.7 227 31.7
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 6.7e-11 72.0 248 30.6
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-10 71.2 249 30.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-10 71.2 60 65.0
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.1e-10 71.2 137 38.7
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.6e-10 70.1 234 32.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 3.3e-10 69.7 86 53.5
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.3e-09 67.8 229 35.8
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 6.3e-09 65.5 128 39.8
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.6e-07 60.1 351 26.5
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 7.7e-07 58.5 72 47.2
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 1.0e-06 58.2 206 31.6


User provided reference genes

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