Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.0e-141 505.4 294 100.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 8.8e-133 477.2 251 93.2
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 2.2e-128 462.6 250 89.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.9e-128 462.2 250 89.2
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 2.9e-128 462.2 250 89.6
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.8e-128 461.8 250 88.8
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 5.0e-128 461.5 250 88.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.5e-128 461.1 253 88.5
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.9e-127 459.5 250 89.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 2.5e-127 459.1 253 88.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.2e-127 458.8 250 87.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 4.2e-127 458.4 249 88.4
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 4.2e-127 458.4 250 88.4
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 4.2e-127 458.4 248 89.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.2e-126 456.8 250 87.6
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.2e-126 456.8 248 88.7
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.6e-126 456.4 250 88.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-126 456.4 249 88.8
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.1e-126 456.1 250 88.4
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.1e-126 456.1 262 85.5
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.7e-126 455.7 250 88.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.6e-126 455.3 250 88.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.6e-126 455.3 250 87.6
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 6.1e-126 454.5 250 88.4
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 8.0e-126 454.1 253 87.0
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 8.0e-126 454.1 250 88.4
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.0e-125 453.8 249 87.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.0e-125 453.8 253 86.6
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.0e-125 453.8 253 86.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.4e-125 453.4 249 86.7
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.3e-125 452.6 253 85.4
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.3e-125 452.6 250 86.0
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.3e-125 452.6 249 88.0
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-125 452.6 249 88.0
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-125 452.6 249 88.0
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 4.0e-125 451.8 250 88.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.0e-125 451.8 248 88.3
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.0e-125 451.8 250 88.0
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 6.7e-125 451.1 253 85.8
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 8.8e-125 450.7 251 86.9
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 8.8e-125 450.7 251 86.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 8.8e-125 450.7 245 88.6
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 8.8e-125 450.7 248 87.9
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 8.8e-125 450.7 250 87.6
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.1e-124 450.3 252 85.7
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-124 450.3 249 87.6
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.1e-124 450.3 250 85.6
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.5e-124 449.9 251 86.9
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 1.5e-124 449.9 253 86.2
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.5e-124 449.9 242 89.7
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.0e-124 449.5 249 86.3
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.0e-124 449.5 250 86.4
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.3e-124 448.7 249 87.1
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 4.4e-124 448.4 249 87.1
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 4.4e-124 448.4 249 87.6
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 5.7e-124 448.0 249 87.1
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 7.5e-124 447.6 250 88.0
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 7.5e-124 447.6 253 85.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 7.5e-124 447.6 253 85.0
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.5e-124 447.6 250 86.4
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 7.5e-124 447.6 249 85.5
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 9.7e-124 447.2 250 86.4
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 9.7e-124 447.2 250 86.4
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 9.7e-124 447.2 250 86.0
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.7e-123 446.4 253 85.4
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.7e-123 446.4 246 87.0
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.7e-123 446.4 247 90.3
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.7e-123 446.4 250 86.4
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.7e-123 446.4 250 86.0
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.7e-123 446.4 250 86.0
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.7e-123 446.4 249 87.1
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.2e-123 446.0 253 85.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.2e-123 446.0 251 85.3
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 2.2e-123 446.0 249 87.1
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 3.7e-123 445.3 253 85.0
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 4.8e-123 444.9 252 85.3
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.1e-122 443.7 250 85.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.4e-122 443.4 251 84.5
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.4e-122 443.4 252 84.9
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.8e-122 443.0 250 85.6
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-122 443.0 247 86.2
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 7.0e-122 441.0 253 83.8
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 9.1e-122 440.7 250 85.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.0e-121 439.5 244 86.9
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 2.7e-121 439.1 251 83.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 4.5e-121 438.3 251 84.1
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 5.9e-121 438.0 248 84.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.9e-120 435.6 267 80.9
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 6.5e-120 434.5 250 83.2
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 5.5e-119 431.4 249 87.6
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.7e-118 429.1 228 90.8
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 4.7e-118 428.3 224 93.8
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 5.2e-117 424.9 251 85.3
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 5.4e-114 414.8 265 80.4
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 2.7e-113 412.5 252 79.4
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.9e-111 406.4 251 78.1
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.9e-111 406.4 349 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.4e-109 400.2 243 79.4
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 4.0e-109 398.7 244 79.5
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 8.3e-107 391.0 248 78.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 7.5e-100 367.9 217 83.9
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.4e-98 363.6 191 93.2
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.6e-96 354.8 190 91.1
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 8.3e-91 337.8 171 95.9
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.2e-89 334.0 171 94.2
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 6.6e-88 328.2 244 67.6
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.9e-87 326.6 181 89.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.6e-86 323.6 168 93.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.4e-82 309.7 183 84.2
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.1e-78 294.7 185 76.8
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.2e-75 286.6 162 85.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-74 283.5 164 85.4
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-73 280.0 164 82.9
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.7e-73 279.6 164 84.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.0e-72 277.7 145 93.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.7e-70 268.9 147 89.8
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.4e-69 266.5 155 85.8
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.0e-68 263.5 155 85.2
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.6e-68 261.5 213 66.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.7e-67 260.4 146 89.0
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 2.9e-67 259.6 156 82.7
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.1e-62 243.4 148 82.4
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-60 236.9 171 70.8
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.4e-53 214.2 141 76.6
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.4e-53 213.4 190 55.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-52 209.1 151 71.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 4.6e-41 172.6 167 58.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 3.9e-40 169.5 93 86.0
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.7e-32 142.1 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.2e-28 131.3 129 57.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.4e-26 124.4 71 84.5
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.0e-24 118.2 93 63.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.2e-17 94.7 59 71.2
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.0e-15 87.4 46 82.6
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.1e-10 71.6 55 61.8
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 1.1e-10 71.6 55 61.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 8.0e-09 65.5 49 63.3
Sed0013878 Sechium edule HOM05D030426 ORTHO05D029164 1.7e-06 57.8 29 93.1


User provided reference genes

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