Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 6.2e-51 204.1 127 100.0
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 4.5e-41 171.4 127 88.2
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 7.6e-41 170.6 127 87.4
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 1.3e-32 143.3 105 78.1
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 2.0e-25 119.4 130 57.7
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 7.6e-25 117.5 109 62.4
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 2.2e-24 115.9 129 57.4
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 8.4e-24 114.0 133 62.4
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.9e-23 112.8 129 55.0
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 3.2e-23 112.1 108 62.0
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 3.2e-23 112.1 130 54.6
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 4.2e-23 111.7 129 55.0
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.2e-23 111.7 129 55.0
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 4.2e-23 111.7 130 56.2
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 5.5e-23 111.3 128 55.5
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 7.1e-23 110.9 108 59.3
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 7.1e-23 110.9 102 63.7
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 7.1e-23 110.9 129 52.7
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 3.5e-22 108.6 127 57.5
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 3.5e-22 108.6 76 78.9
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 3.5e-22 108.6 104 61.5
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 3.5e-22 108.6 111 59.5
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 6.0e-22 107.8 130 53.1
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 1.8e-21 106.3 128 51.6
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 1.8e-21 106.3 128 51.6
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 1.8e-21 106.3 127 51.2
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 2.3e-21 105.9 131 56.5
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 2.3e-21 105.9 128 51.6
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 3.0e-21 105.5 131 56.5
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 3.9e-21 105.1 135 51.9
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 3.9e-21 105.1 102 59.8
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 3.9e-21 105.1 129 50.4
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 5.1e-21 104.8 109 61.5
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 6.7e-21 104.4 98 59.2
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 8.7e-21 104.0 128 52.3
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 8.7e-21 104.0 127 56.7
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.5e-20 102.4 128 50.8
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 3.3e-20 102.1 101 58.4
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 4.3e-20 101.7 127 52.0
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 5.7e-20 101.3 105 58.1
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 9.7e-20 100.5 101 57.4
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 1.3e-19 100.1 127 52.8
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.3e-19 100.1 103 56.3
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 3.7e-19 98.6 128 50.0
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 6.3e-19 97.8 110 50.9
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 8.2e-19 97.4 136 51.5
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 8.2e-19 97.4 136 50.0
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 8.2e-19 97.4 130 56.2
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 1.1e-18 97.1 128 50.8
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 1.1e-18 97.1 107 56.1
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 1.4e-18 96.7 131 46.6
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 1.8e-18 96.3 128 50.0
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 1.8e-18 96.3 134 58.2
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 2.4e-18 95.9 107 54.2
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 2.4e-18 95.9 111 53.2
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 3.1e-18 95.5 128 48.4
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 3.1e-18 95.5 131 46.6
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 4.1e-18 95.1 108 58.3
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 5.3e-18 94.7 134 47.8
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 5.3e-18 94.7 135 48.1
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 9.0e-18 94.0 87 60.9
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 9.0e-18 94.0 131 49.6
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 9.0e-18 94.0 76 67.1
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 1.2e-17 93.6 101 54.5
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 2.0e-17 92.8 101 53.5
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 2.0e-17 92.8 104 52.9
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 2.0e-17 92.8 108 53.7
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 2.6e-17 92.4 91 57.1
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 3.4e-17 92.0 98 56.1
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 4.5e-17 91.7 100 55.0
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 4.5e-17 91.7 130 46.9
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 5.9e-17 91.3 134 48.5
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 5.9e-17 91.3 134 48.5
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 7.6e-17 90.9 76 65.8
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 7.6e-17 90.9 76 65.8
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 1.7e-16 89.7 130 49.2
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 2.9e-16 89.0 112 50.9
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 6.5e-16 87.8 125 44.8
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 6.5e-16 87.8 111 50.5
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 8.5e-16 87.4 110 48.2
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.9e-15 86.3 107 46.7
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.9e-15 86.3 107 46.7
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 2.5e-15 85.9 107 50.5
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 2.5e-15 85.9 160 40.0
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 3.2e-15 85.5 107 45.8
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 3.2e-15 85.5 111 52.3
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 4.2e-15 85.1 136 46.3
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 5.5e-15 84.7 107 45.8
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 5.5e-15 84.7 76 59.2
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 5.5e-15 84.7 76 59.2
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 5.5e-15 84.7 107 51.4
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 7.2e-15 84.3 107 45.8
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 7.2e-15 84.3 107 45.8
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 9.4e-15 84.0 107 45.8
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 1.6e-14 83.2 107 48.6
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 2.1e-14 82.8 108 45.4
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 2.1e-14 82.8 108 45.4
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 2.1e-14 82.8 108 45.4
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 4.6e-14 81.6 76 59.2
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 6.1e-14 81.3 100 48.0
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 3.0e-13 79.0 131 45.8
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 5.1e-13 78.2 105 44.8
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 5.1e-13 78.2 141 44.7
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 1.5e-12 76.6 84 53.6
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 2.5e-12 75.9 112 47.3
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 9.7e-12 73.9 75 54.7
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 1.1e-10 70.5 131 41.2
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 3.2e-07 58.9 70 47.1


User provided reference genes

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