Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 2.9e-144 515.4 289 100.0
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 1.1e-87 327.4 293 65.9
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 6.1e-86 321.6 294 68.0
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 2.3e-85 319.7 283 63.3
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 2.3e-53 213.4 299 45.5
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 6.3e-51 205.3 296 48.3
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 3.8e-48 196.1 302 47.0
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.7e-46 189.1 290 43.8
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 1.0e-45 188.0 312 46.5
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.0e-45 188.0 300 43.3
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.4e-45 187.6 308 41.6
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.3e-45 186.8 299 44.1
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.3e-45 186.8 299 44.1
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 8.9e-45 184.9 299 44.1
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.5e-44 184.1 297 43.8
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 4.9e-43 179.1 295 43.7
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.4e-42 177.6 295 43.4
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 9.2e-42 174.9 289 47.4
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 8.6e-40 168.3 295 46.1
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 2.5e-39 166.8 257 40.5
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 4.3e-39 166.0 298 44.0
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 5.6e-39 165.6 291 38.1
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 7.3e-39 165.2 255 42.7
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 9.5e-39 164.9 254 40.9
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 9.5e-39 164.9 254 40.9
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.2e-38 164.5 288 40.6
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 2.1e-38 163.7 292 46.2
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 4.7e-38 162.5 312 40.1
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 4.4e-36 156.0 301 44.2
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 7.5e-36 155.2 305 45.6
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.9e-35 152.5 297 40.4
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 4.9e-35 152.5 298 44.3
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 1.1e-34 151.4 288 37.5
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 4.1e-34 149.4 281 46.3
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.6e-33 146.0 263 46.8
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 6.0e-33 145.6 279 40.9
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 3.0e-32 143.3 311 42.4
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 3.0e-32 143.3 277 38.6
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.0e-32 142.5 292 45.2
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 6.6e-32 142.1 304 40.8
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 6.6e-32 142.1 290 45.5
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.1e-31 141.4 300 34.0
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.5e-31 141.0 297 44.1
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 4.3e-31 139.4 305 45.2
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 2.1e-30 137.1 272 35.3
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.8e-30 136.7 271 42.1
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 3.6e-30 136.3 310 41.3
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 1.4e-29 134.4 270 35.6
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.8e-29 134.0 278 36.0
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 1.2e-28 131.3 296 35.1
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 7.5e-28 128.6 290 39.3
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 6.4e-27 125.6 297 34.7
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-26 124.8 254 43.7
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.1e-26 122.9 254 41.7
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 4.1e-26 122.9 254 41.7
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 5.4e-26 122.5 317 39.4
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.0e-24 118.2 288 33.0
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.5e-23 114.4 290 32.8
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.3e-23 112.8 292 32.2
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 6.2e-22 109.0 252 34.5
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.1e-22 108.6 288 33.7
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 3.1e-21 106.7 265 32.5
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 5.2e-21 105.9 271 35.4
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 5.2e-21 105.9 259 33.6
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.5e-20 104.4 309 31.7
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.0e-20 104.0 289 40.5
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 2.6e-20 103.6 241 43.2
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.6e-20 103.6 289 33.6
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 7.6e-20 102.1 279 31.2
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 1.7e-19 100.9 267 32.2
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 6.4e-19 99.0 256 35.9
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 1.1e-18 98.2 244 40.2
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 7.1e-18 95.5 311 31.5
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 4.6e-17 92.8 278 30.6
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 6.0e-17 92.4 302 31.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.3e-16 90.5 258 32.6
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 3.0e-16 90.1 297 31.6
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 5.1e-16 89.4 238 32.8
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 6.6e-16 89.0 234 38.5
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 1.5e-15 87.8 306 28.4
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.5e-15 87.8 313 30.0
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.5e-15 87.8 265 30.9
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.5e-15 87.0 277 30.3
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 9.6e-15 85.1 267 30.3
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 9.6e-15 85.1 267 31.1
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.2e-14 84.7 296 30.4
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.6e-14 84.3 276 29.7
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.6e-14 84.3 268 30.6
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.8e-14 83.6 295 30.2
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 3.6e-14 83.2 316 30.4
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.1e-13 81.6 144 36.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 1.4e-13 81.3 267 28.5
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.8e-13 80.9 307 33.2
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.8e-13 80.9 285 29.1
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.8e-13 80.9 126 42.9
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.4e-13 80.5 264 31.1
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 4.0e-13 79.7 287 28.6
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 2.0e-12 77.4 268 27.6
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 2.0e-12 77.4 268 31.0
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 2.0e-12 77.4 318 27.7
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 5.8e-12 75.9 200 33.0
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 1.3e-11 74.7 277 27.4
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.3e-11 74.7 308 28.2
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 2.2e-11 73.9 290 29.0
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 2.2e-11 73.9 295 29.2
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 2.9e-11 73.6 295 30.2
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 4.9e-11 72.8 289 28.4
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 6.4e-11 72.4 274 31.8
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 8.4e-11 72.0 259 27.8
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 1.9e-10 70.9 260 33.5
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 2.4e-10 70.5 257 27.2
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 4.2e-10 69.7 330 27.0
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.7e-09 67.0 301 29.6
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 6.0e-09 65.9 301 26.6
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 1.7e-08 64.3 237 26.2
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.9e-08 63.2 117 38.5
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.1e-07 61.6 298 26.2
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.3e-07 60.1 80 47.5
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.3e-07 59.7 190 30.0
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 9.6e-07 58.5 264 26.1
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 9.6e-07 58.5 331 30.2
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 2.1e-06 57.4 276 30.8
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 4.8e-06 56.2 137 37.2


User provided reference genes

Program Settings