Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 2.3e-69 265.4 129 100.0
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 4.5e-49 198.0 145 71.7
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.5e-49 198.0 145 71.7
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.1e-30 136.0 147 51.7
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-29 132.5 148 50.0
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.3e-29 132.5 148 50.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.0e-29 132.1 148 50.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.0e-29 132.1 139 51.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 6.8e-29 131.0 139 51.8
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 4.4e-28 128.3 149 52.3
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.7e-27 125.2 148 45.9
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 3.7e-27 125.2 138 50.0
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 6.3e-27 124.4 142 49.3
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.4e-26 123.2 133 54.9
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.8e-26 122.9 124 53.2
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-26 122.9 133 53.4
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.8e-26 122.9 135 53.3
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.4e-26 122.5 127 50.4
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 3.1e-26 122.1 143 47.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 5.4e-26 121.3 100 65.0
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.4e-26 121.3 133 53.4
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.0e-26 120.9 133 52.6
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 7.0e-26 120.9 140 47.1
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 3.5e-25 118.6 140 46.4
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.5e-25 118.6 145 46.2
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.0e-24 117.1 138 48.6
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.0e-24 117.1 140 47.1
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.0e-24 117.1 136 46.3
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.7e-24 116.3 146 45.9
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.3e-24 115.9 145 46.2
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 2.9e-24 115.5 135 51.9
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 2.9e-24 115.5 145 46.2
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 2.9e-24 115.5 134 48.5
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 3.8e-24 115.2 134 46.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 3.8e-24 115.2 136 47.1
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 3.8e-24 115.2 139 47.5
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 5.0e-24 114.8 149 49.0
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 8.6e-24 114.0 145 46.2
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.1e-23 113.6 138 44.2
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.5e-23 113.2 140 44.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.5e-23 113.2 148 45.3
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.5e-23 113.2 143 45.5
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.9e-23 112.8 147 44.9
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.9e-23 112.8 147 47.6
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 3.3e-23 112.1 150 44.7
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 4.3e-23 111.7 137 50.4
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.3e-23 111.7 143 44.8
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 4.3e-23 111.7 147 44.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 5.6e-23 111.3 144 47.9
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 7.3e-23 110.9 144 47.9
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 7.3e-23 110.9 133 48.1
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 9.5e-23 110.5 144 47.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.6e-22 109.8 140 44.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.1e-22 109.4 135 45.9
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.1e-22 109.4 135 45.9
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-22 109.4 143 44.8
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 8.0e-22 107.5 137 44.5
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.0e-21 107.1 138 50.0
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.0e-21 107.1 118 54.2
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.8e-21 106.3 137 46.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.0e-21 105.5 143 45.5
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.0e-21 105.1 135 44.4
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 5.2e-21 104.8 138 42.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 6.8e-21 104.4 148 45.9
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 8.9e-21 104.0 118 50.8
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.2e-20 103.6 133 45.9
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.5e-20 103.2 135 45.9
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 2.0e-20 102.8 136 45.6
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.6e-20 102.4 153 44.4
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 3.4e-20 102.1 117 48.7
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.4e-20 102.1 142 47.2
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 3.4e-20 102.1 118 48.3
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.4e-20 101.7 138 47.8
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.4e-20 101.7 154 40.9
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 5.7e-20 101.3 117 47.9
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 5.7e-20 101.3 117 47.9
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 7.5e-20 100.9 117 47.9
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 9.8e-20 100.5 119 48.7
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 1.3e-19 100.1 117 47.0
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.3e-19 100.1 113 47.8
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.7e-19 99.8 130 44.6
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.7e-19 99.8 138 41.3
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 2.2e-19 99.4 117 47.0
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.2e-19 99.4 132 49.2
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.2e-19 99.4 115 48.7
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.9e-19 99.0 148 43.9
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.9e-19 99.0 136 43.4
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.9e-19 99.0 154 40.3
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 3.7e-19 98.6 119 47.9
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.9e-19 98.2 142 46.5
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 4.9e-19 98.2 130 42.3
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.1e-18 97.1 137 44.5
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.1e-18 97.1 137 44.5
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.8e-18 96.3 141 42.6
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.4e-18 95.9 128 43.0
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 9.2e-18 94.0 141 43.3
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 9.2e-18 94.0 130 41.5
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.7e-17 92.4 120 45.0
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 4.6e-17 91.7 120 45.8
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.9e-17 91.3 132 43.2
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 7.8e-17 90.9 117 44.4
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 7.8e-17 90.9 119 44.5
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 7.8e-17 90.9 122 45.9
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.3e-16 89.4 119 44.5
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.0e-16 89.0 133 42.1
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.0e-16 88.2 134 42.5
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 8.6e-16 87.4 149 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.1e-15 87.0 140 40.0
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.1e-15 87.0 125 42.4
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.5e-15 85.9 135 42.2
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.3e-15 85.5 151 39.7
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.3e-15 85.1 119 42.9
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 4.3e-15 85.1 127 44.1
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.6e-15 84.7 160 36.2
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.6e-15 84.7 132 41.7
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.6e-15 84.7 132 41.7
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.3e-15 84.3 140 37.9
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 9.5e-15 84.0 148 36.5
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.5e-15 84.0 127 40.2
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.2e-14 83.6 123 43.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 4.7e-14 81.6 136 40.4
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 6.2e-14 81.3 122 45.1
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.0e-14 80.9 135 36.3
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 1.4e-13 80.1 115 42.6
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.4e-13 80.1 147 40.1
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.4e-13 80.1 141 40.4
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.4e-13 80.1 127 43.3
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.8e-13 79.7 134 41.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.8e-13 79.7 122 41.0
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 4.0e-13 78.6 147 38.1
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 8.9e-13 77.4 150 35.3
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 8.9e-13 77.4 101 46.5
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.2e-12 77.0 160 35.6
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.5e-12 76.6 119 37.8
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-12 75.9 127 33.9
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.4e-12 75.1 115 41.7
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 7.5e-12 74.3 146 37.0
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.5e-12 74.3 138 29.7
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.5e-12 74.3 124 34.7
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 9.8e-12 73.9 143 35.7
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.3e-11 73.6 118 38.1
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.3e-11 73.6 107 43.9
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.7e-11 72.0 75 50.7
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.9e-11 71.6 136 34.6
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.4e-11 71.2 126 35.7
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 8.3e-11 70.9 130 36.9
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-10 70.5 133 33.1
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-10 70.1 129 32.6
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.2e-10 67.4 137 30.7
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.6e-09 66.6 57 56.1
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 1.6e-09 66.6 100 42.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 2.7e-09 65.9 117 39.3
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 7.8e-09 64.3 93 49.5
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.0e-08 63.9 133 36.8
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.0e-08 63.9 49 59.2
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 1.0e-08 63.9 119 38.7
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.0e-08 61.6 138 31.9
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 8.6e-08 60.8 49 61.2
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-07 60.5 76 43.4
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-07 60.5 76 43.4
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.5e-07 60.1 46 65.2
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 5.6e-07 58.2 89 37.1
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 5.6e-07 58.2 103 38.8
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 8.1e-06 54.3 130 33.1


User provided reference genes

Program Settings