Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 2.4e-32 141.7 79 100.0
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 4.3e-26 120.9 77 75.3
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 3.4e-23 111.3 77 74.0
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.3e-19 98.6 79 70.9
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.4e-13 79.3 77 51.9
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 7.1e-13 77.0 77 49.4
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 7.1e-13 77.0 68 54.4
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 7.1e-13 77.0 77 50.6
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 9.3e-13 76.6 67 56.7
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 9.3e-13 76.6 66 56.1
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 1.2e-12 76.3 67 53.7
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.2e-12 76.3 67 53.7
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 1.2e-12 76.3 68 52.9
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 3.5e-12 74.7 66 63.6
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.5e-12 74.7 67 52.2
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.5e-12 74.7 67 52.2
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 6.0e-12 73.9 67 50.7
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 7.9e-12 73.6 67 58.2
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 7.9e-12 73.6 63 58.7
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 1.0e-11 73.2 67 65.7
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.3e-11 72.8 60 58.3
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 1.8e-11 72.4 67 52.2
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 1.8e-11 72.4 67 52.2
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 1.8e-11 72.4 67 52.2
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.8e-11 72.4 77 55.8
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 2.3e-11 72.0 73 57.5
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 3.0e-11 71.6 77 48.1
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 3.9e-11 71.2 71 50.7
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 3.9e-11 71.2 66 53.0
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 5.1e-11 70.9 67 52.2
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 6.7e-11 70.5 72 61.1
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 6.7e-11 70.5 73 56.2
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 8.7e-11 70.1 67 64.2
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 8.7e-11 70.1 67 50.7
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 8.7e-11 70.1 66 48.5
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.1e-10 69.7 68 52.9
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 1.5e-10 69.3 68 50.0
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 1.5e-10 69.3 66 50.0
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.9e-10 68.9 77 53.2
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.9e-10 68.9 66 51.5
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 2.5e-10 68.6 77 57.1
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 2.5e-10 68.6 74 47.3
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 3.3e-10 68.2 70 52.9
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 3.3e-10 68.2 67 70.1
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 3.3e-10 68.2 77 55.8
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 4.3e-10 67.8 72 51.4
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 4.3e-10 67.8 77 51.9
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 4.3e-10 67.8 67 49.3
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 5.6e-10 67.4 70 52.9
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 7.4e-10 67.0 68 48.5
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 7.4e-10 67.0 68 48.5
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 9.6e-10 66.6 67 59.7
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 9.6e-10 66.6 78 57.7
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 9.6e-10 66.6 72 58.3
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 1.3e-09 66.2 77 44.2
Lalb_Chr14g0375161 Lupinus albus HOM05D004372 ORTHO05D004331 1.6e-09 65.9 54 74.1
Potri.010G201900 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.6e-09 65.9 68 60.3
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.6e-09 65.9 59 64.4
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.1e-09 65.5 67 46.3
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 2.8e-09 65.1 72 47.2
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 2.8e-09 65.1 72 47.2
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 2.8e-09 65.1 68 48.5
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 2.8e-09 65.1 76 50.0
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.7e-09 64.7 72 47.2
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 3.7e-09 64.7 67 50.7
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 3.7e-09 64.7 65 61.5
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 3.7e-09 64.7 67 49.3
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 4.8e-09 64.3 72 47.2
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 4.8e-09 64.3 72 47.2
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 4.8e-09 64.3 66 66.7
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 1.1e-08 63.2 73 52.1
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.4e-08 62.8 65 50.8
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.4e-08 62.8 65 50.8
Phvul.L007143 Phaseolus vulgaris HOM05D016115 ORTHO05D004331 1.8e-08 62.4 56 64.3
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.8e-08 62.4 63 50.8
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 1.8e-08 62.4 77 50.6
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 2.4e-08 62.0 69 47.8
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 2.4e-08 62.0 62 50.0
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.4e-08 62.0 54 57.4
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 3.1e-08 61.6 69 44.9
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 3.1e-08 61.6 68 48.5
Potri.008G057600 Populus trichocarpa HOM05D004372 ORTHO05D004331 3.1e-08 61.6 68 55.9
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 4.0e-08 61.2 72 45.8
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 4.0e-08 61.2 59 49.2
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 4.0e-08 61.2 66 48.5
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 5.3e-08 60.8 68 50.0
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 6.9e-08 60.5 78 47.4
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 9.0e-08 60.1 68 58.8
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 9.0e-08 60.1 55 52.7
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 9.0e-08 60.1 55 52.7
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 1.2e-07 59.7 71 42.3
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.2e-07 59.7 65 49.2
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.2e-07 59.7 75 44.0
Ciclev10029728m.g Citrus clementina HOM05D004372 ORTHO05D004331 1.5e-07 59.3 71 53.5
Lj3g0018051 Lotus japonicus HOM05D016115 ORTHO05D004331 1.5e-07 59.3 67 59.7
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 1.5e-07 59.3 74 41.9
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.5e-07 59.3 71 43.7
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 2.0e-07 58.9 66 47.0
C08p03110 Brassica napus HOM05D004372 ORTHO05D004331 2.6e-07 58.5 78 43.6
BolC8t47109H Brassica oleracea HOM05D004372 ORTHO05D004331 2.6e-07 58.5 78 43.6
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 2.6e-07 58.5 69 46.4
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 2.6e-07 58.5 66 47.0
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 3.4e-07 58.2 62 45.2
Atru.chr3.3970 Acer truncatum HOM05D004372 ORTHO05D004331 3.4e-07 58.2 69 59.4
arahy.Tifrunner.gnm1.ann1.JA3FRH Arachis hypogaea HOM05D016115 ORTHO05D004331 3.4e-07 58.2 61 62.3
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 3.4e-07 58.2 70 44.3
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 3.4e-07 58.2 67 49.3
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 3.4e-07 58.2 64 48.4
VMungo1383G0344 Vigna mungo HOM05D017754 ORTHO05D004331 3.4e-07 58.2 74 51.4
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 4.5e-07 57.8 67 44.8
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 5.8e-07 57.4 60 45.0
Lalb_Chr03g0042351 Lupinus albus HOM05D004372 ORTHO05D004331 5.8e-07 57.4 70 50.0
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 5.8e-07 57.4 69 46.4
THA.LOC109117261 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 9.9e-07 56.6 62 43.5
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.3e-06 56.2 63 50.8
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.7e-06 55.8 66 47.0
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 2.2e-06 55.5 79 44.3
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 2.2e-06 55.5 64 46.9
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 2.2e-06 55.5 64 53.1
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.9e-06 55.1 73 39.7
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.9e-06 55.1 77 44.2
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 2.9e-06 55.1 77 44.2
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 3.8e-06 54.7 79 41.8
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 3.8e-06 54.7 68 47.1
Phvul.008G119300 Phaseolus vulgaris HOM05D017754 ORTHO05D004331 3.8e-06 54.7 67 52.2
TWI74G0654 Tripterygium wilfordii HOM05D004372 ORTHO05D004331 3.8e-06 54.7 67 55.2
Atru.chr8.1996 Acer truncatum HOM05D004372 ORTHO05D004331 6.4e-06 53.9 67 53.7
Glyma.07G133800 Glycine max HOM05D017754 ORTHO05D004331 6.4e-06 53.9 67 52.2
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 6.4e-06 53.9 68 51.5
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 6.4e-06 53.9 64 50.0
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 6.4e-06 53.9 75 41.3
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 8.4e-06 53.5 74 43.2
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 8.4e-06 53.5 60 45.0
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 8.4e-06 53.5 77 40.3
PGR004G0648 Punica granatum HOM05D004372 ORTHO05D004331 8.4e-06 53.5 69 55.1


User provided reference genes

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