Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.2e-163 579.7 281 100.0
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.5e-137 492.3 272 88.2
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 3.6e-136 488.4 272 87.5
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 5.3e-135 484.6 272 87.1
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.4e-103 379.4 272 69.9
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 2.0e-102 376.3 274 69.3
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.4e-102 375.6 274 69.3
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.2e-101 372.9 276 68.8
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 5.5e-100 368.2 272 68.4
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.6e-99 366.7 277 67.5
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.9e-98 362.1 230 75.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 6.7e-98 361.3 257 66.1
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 1.5e-97 360.1 260 66.9
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.6e-97 359.4 274 66.4
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 9.7e-97 357.5 276 66.3
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 2.8e-96 355.9 207 79.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 9.1e-95 350.9 237 70.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 2.6e-94 349.4 208 76.0
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.6e-94 349.4 208 76.0
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 5.9e-94 348.2 257 67.3
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 7.7e-94 347.8 255 67.5
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.0e-93 347.4 280 62.9
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.2e-93 346.3 261 68.6
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-93 345.5 194 81.4
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-93 345.5 194 81.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 5.0e-93 345.1 229 70.7
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 6.5e-93 344.7 257 62.6
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.5e-93 344.4 280 62.5
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 1.1e-92 344.0 208 75.5
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 1.1e-92 344.0 216 74.1
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.1e-92 344.0 212 74.1
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.4e-92 343.6 217 71.9
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.2e-92 342.4 231 70.6
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.2e-92 342.4 208 75.0
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.2e-92 342.0 257 62.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.2e-92 342.0 208 75.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 9.4e-92 340.9 208 74.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 9.4e-92 340.9 208 74.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 9.4e-92 340.9 208 74.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 2.1e-91 339.7 226 70.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-91 339.3 217 76.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-91 339.3 217 76.0
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.6e-91 339.0 258 63.6
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 6.1e-91 338.2 208 74.0
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 6.1e-91 338.2 208 73.6
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 7.9e-91 337.8 208 73.6
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 7.9e-91 337.8 210 73.8
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 1.0e-90 337.4 227 69.2
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.4e-90 337.0 208 75.5
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 3.0e-90 335.9 208 73.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 5.2e-90 335.1 245 63.7
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.1e-89 334.0 209 71.8
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.5e-89 333.6 272 60.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.5e-89 333.6 276 60.1
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.0e-89 333.2 257 60.7
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 2.6e-89 332.8 208 72.6
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.6e-89 332.8 222 68.5
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.3e-89 332.4 227 70.0
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.4e-89 332.0 257 60.3
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 5.7e-89 331.6 193 78.2
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 5.7e-89 331.6 285 61.1
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 9.7e-89 330.9 274 63.1
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 1.7e-88 330.1 278 58.6
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 2.2e-88 329.7 210 72.4
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 2.8e-88 329.3 206 72.3
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.8e-88 329.3 200 73.5
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 3.7e-88 328.9 208 71.6
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 8.2e-88 327.8 208 71.2
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 2.4e-87 326.2 244 65.2
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 9.1e-87 324.3 203 72.9
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.5e-86 322.4 194 75.8
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 4.5e-86 322.0 296 56.4
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 4.5e-86 322.0 273 61.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 8.5e-85 317.8 209 68.9
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.2e-84 315.5 231 64.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.5e-84 315.1 231 64.5
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 1.6e-83 313.5 194 71.6
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.7e-83 312.8 224 65.6
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 5.2e-82 308.5 206 69.9
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.2e-81 307.4 217 63.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.3e-81 305.8 240 60.0
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 7.5e-81 304.7 238 62.6
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 9.1e-79 297.7 237 59.9
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 5.9e-78 295.0 209 66.5
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.1e-76 290.8 220 61.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.6e-75 285.8 257 60.3
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.8e-74 283.5 250 59.2
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 2.3e-74 283.1 173 74.6
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 2.0e-73 280.0 173 74.0
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 1.1e-71 274.2 210 62.4
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 3.1e-71 272.7 176 68.8
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 5.9e-70 268.5 151 82.1
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.3e-69 266.5 227 59.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 2.9e-69 266.2 182 67.0
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.5e-68 263.1 245 55.9
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 3.2e-68 262.7 177 73.4
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 4.4e-65 252.3 208 58.7
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 5.7e-65 251.9 191 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 8.3e-64 248.1 194 61.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.5e-62 242.7 226 55.8
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 2.9e-61 239.6 253 48.6
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 6.4e-56 221.9 171 60.8
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 3.9e-53 212.6 250 46.8
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 3.6e-43 179.5 236 39.8
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.5e-41 174.1 218 44.5
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 5.8e-41 172.2 157 54.1
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 3.5e-38 162.9 126 61.1
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 4.3e-36 156.0 211 42.2
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 1.1e-34 151.4 102 67.6
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 3.2e-31 139.8 99 67.7
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 9.2e-31 138.3 114 57.9
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.3e-29 133.7 149 48.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.7e-24 117.5 119 52.1
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 3.8e-24 116.3 154 41.6
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 4.9e-24 115.9 126 44.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 6.4e-24 115.5 119 51.3
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 3.0e-21 106.7 155 42.6
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.9e-20 104.0 65 72.3
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.5e-20 103.6 137 41.6
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 4.9e-16 89.4 85 52.9
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.6e-14 84.3 56 71.4
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 9.6e-12 75.1 121 36.4
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 4.8e-11 72.8 122 36.1
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-10 71.2 65 53.8
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 7.6e-09 65.5 95 40.0
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-08 64.7 61 50.8
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.9e-08 62.8 50 64.0
BolC9t53282H Brassica oleracea HOM05D001287 ORTHO05D001226 8.4e-08 62.0 185 27.6
BcaB04g19439 Brassica carinata HOM05D001287 ORTHO05D001226 1.1e-07 61.6 185 27.6
BcaC04g23902 Brassica carinata HOM05D001287 ORTHO05D001226 1.1e-07 61.6 185 27.6
C09p03630 Brassica napus HOM05D001287 ORTHO05D001226 1.1e-07 61.6 185 27.6
BraA09t35980Z Brassica rapa HOM05D001287 ORTHO05D001226 1.4e-07 61.2 184 27.2
Carub.0005s0585 Capsella rubella HOM05D001287 ORTHO05D001226 2.4e-07 60.5 165 29.7
CARHR148810 Cardamine hirsuta HOM05D001287 ORTHO05D001226 2.4e-07 60.5 183 28.4
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 2.4e-07 60.5 175 26.3
Thhalv10005624m.g Eutrema salsugineum HOM05D001287 ORTHO05D001226 3.2e-07 60.1 183 27.3
Gohir.A05G354300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 3.2e-07 60.1 165 30.3
Gorai.012G065500 Gossypium raimondii HOM05D001287 ORTHO05D001226 3.2e-07 60.1 165 30.3
AT3G27440 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 4.2e-07 59.7 166 28.3
DCAR_015065 Daucus carota HOM05D001287 ORTHO05D001226 4.2e-07 59.7 165 31.5
Sp2g16640 Schrenkiella parvula HOM05D001287 ORTHO05D001226 4.2e-07 59.7 165 28.5
Hma1.2p1_0279F.1_g112630 Hydrangea macrophylla HOM05D001287 ORTHO05D001226 7.1e-07 58.9 176 26.1
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 7.1e-07 58.9 49 59.2
Solyc06g065580.3 Solanum lycopersicum HOM05D001287 ORTHO05D001226 7.1e-07 58.9 177 27.7
Sopen06g024100 Solanum pennellii HOM05D001287 ORTHO05D001226 7.1e-07 58.9 177 27.7
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 9.3e-07 58.5 50 60.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 1.2e-06 58.2 50 60.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 2.1e-06 57.4 56 51.8
ECA246G0314 Erigeron canadensis HOM05D001287 ORTHO05D001226 2.7e-06 57.0 183 26.8
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 4.6e-06 56.2 50 58.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 6.0e-06 55.8 53 50.9


User provided reference genes

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