Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.2e-192 675.6 379 100.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.6e-142 510.0 381 79.3
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.5e-132 476.9 379 73.9
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.1e-131 473.0 379 74.9
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.7e-78 295.8 393 50.6
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 5.2e-77 292.4 396 48.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.5e-76 290.8 402 50.0
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.2e-75 287.0 445 43.8
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 2.2e-75 287.0 396 49.5
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.4e-74 283.5 393 48.1
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 9.1e-74 281.6 404 47.8
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.0e-73 280.4 426 49.3
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.7e-73 280.0 382 47.9
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 3.5e-73 279.6 425 48.0
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 5.9e-73 278.9 403 46.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 2.9e-72 276.6 403 47.4
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.9e-72 276.6 395 46.3
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 6.5e-72 275.4 201 72.6
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 8.5e-72 275.0 394 50.5
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.9e-71 273.9 413 48.2
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 2.5e-71 273.5 387 46.3
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 7.2e-71 271.9 203 72.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.2e-70 271.2 428 45.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.1e-70 270.4 428 47.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.1e-70 270.4 401 45.6
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.7e-70 270.0 421 47.7
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 2.7e-70 270.0 379 47.2
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.7e-70 270.0 413 44.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 3.6e-70 269.6 382 46.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.7e-70 269.2 400 48.2
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 8.0e-70 268.5 426 43.4
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.8e-69 267.3 414 44.0
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.0e-69 266.5 327 50.8
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.4e-68 263.1 381 46.2
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.2e-67 260.4 399 44.9
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.8e-67 259.2 370 45.1
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 8.3e-67 258.5 386 45.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.4e-66 257.7 395 44.6
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.4e-66 256.9 396 45.2
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.4e-66 256.9 430 41.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.1e-66 256.5 404 47.0
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 3.1e-66 256.5 386 45.1
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 7.0e-66 255.4 427 44.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 9.1e-66 255.0 424 42.2
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.6e-65 254.2 408 45.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.5e-65 253.1 341 46.9
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.5e-65 252.7 382 45.8
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.5e-65 252.7 404 43.6
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 5.9e-65 252.3 208 63.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.0e-64 251.5 426 44.4
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.9e-64 250.0 383 46.5
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 3.8e-64 249.6 404 43.6
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.8e-64 249.6 384 44.8
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 7.2e-63 245.4 379 43.3
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.6e-62 244.2 387 44.2
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 2.3e-61 240.4 392 46.2
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 4.0e-61 239.6 233 55.8
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 6.8e-61 238.8 414 42.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.5e-60 237.7 431 41.5
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.7e-60 235.7 407 41.8
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.3e-59 234.6 425 44.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.7e-59 234.2 402 43.8
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.2e-59 233.8 410 44.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 6.3e-59 232.3 362 43.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-58 231.5 211 58.8
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 5.4e-58 229.2 579 35.8
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.2e-57 228.0 378 42.3
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.6e-57 227.6 393 39.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 4.5e-57 226.1 387 43.2
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 5.9e-57 225.7 201 56.2
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 7.8e-57 225.3 389 40.1
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.3e-56 224.6 204 57.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.3e-56 223.8 392 40.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.9e-56 223.4 207 58.9
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 3.3e-55 219.9 212 56.1
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 4.3e-55 219.5 204 56.9
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-54 218.0 157 69.4
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.1e-54 217.2 201 57.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.8e-54 216.9 401 39.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.6e-54 216.5 396 40.2
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 8.0e-54 215.3 383 40.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.5e-52 211.1 415 39.5
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.3e-48 198.0 207 51.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.7e-48 197.6 167 62.3
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 3.0e-48 196.8 328 45.4
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.6e-48 195.7 429 38.0
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 8.6e-48 195.3 385 39.2
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.3e-47 193.4 405 37.0
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.3e-47 193.4 381 44.1
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.3e-47 193.4 387 40.8
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.1e-46 190.7 415 36.4
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 4.7e-46 189.5 394 39.1
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-45 188.3 383 40.5
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 6.4e-43 179.1 495 34.5
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.4e-42 177.9 130 64.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-41 174.9 378 40.7
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.6e-41 174.5 205 46.8
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 2.7e-41 173.7 378 40.2
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.5e-41 173.3 202 48.0
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 6.0e-41 172.6 205 50.2
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 5.1e-40 169.5 379 40.4
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 8.6e-40 168.7 150 58.7
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 5.6e-39 166.0 380 36.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 7.3e-39 165.6 317 40.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.2e-38 164.9 370 36.5
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.7e-32 144.4 389 33.9
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.6e-32 142.5 207 46.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.1e-31 141.7 235 39.1
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.5e-31 141.4 168 46.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.3e-31 140.2 142 54.9
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 3.6e-30 136.7 141 54.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 6.8e-29 132.5 150 48.7
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 4.9e-27 126.3 320 38.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-26 125.2 352 33.5
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.2e-26 123.6 127 48.0
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-24 118.2 214 42.1
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 1.7e-24 117.9 109 56.0
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.5e-23 114.0 70 78.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.7e-22 109.8 87 65.5
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 6.2e-22 109.4 383 30.0
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 4.0e-21 106.7 89 56.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-18 98.6 147 46.3
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 9.6e-15 85.5 63 58.7
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.3e-14 85.1 106 45.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.1e-14 84.3 257 36.6
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-14 84.0 173 36.4
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.1e-14 82.4 114 42.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 4.0e-13 80.1 170 36.5
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 2.0e-12 77.8 156 33.3
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 4.5e-12 76.6 302 31.8
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 4.9e-11 73.2 121 38.0
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.4e-10 71.6 45 66.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.2e-09 68.6 173 34.1
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.0e-08 65.5 57 52.6
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 1.8e-08 64.7 86 41.9
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.9e-08 63.5 84 41.7
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 8.7e-08 62.4 84 41.7
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.1e-07 62.0 56 53.6
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.9e-07 61.2 84 40.5
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 2.5e-07 60.8 52 53.8
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.5e-07 60.8 56 55.4


User provided reference genes

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