Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.6e-106 387.9 192 100.0
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.0e-89 332.0 192 87.0
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.5e-88 328.9 192 85.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 7.3e-88 327.4 191 85.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 8.1e-87 323.9 191 85.3
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 7.4e-72 274.2 192 69.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.4e-72 274.2 181 72.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.1e-70 270.4 192 67.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.8e-70 269.6 178 74.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.4e-70 269.2 191 69.6
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.4e-70 269.2 181 72.9
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.4e-70 269.2 192 69.8
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.1e-70 268.9 190 68.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-70 268.5 181 72.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.9e-70 267.7 177 73.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.9e-70 267.7 177 73.4
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 9.0e-70 267.3 178 73.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.0e-70 267.3 178 73.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.0e-70 267.3 181 71.3
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.2e-69 266.9 178 71.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.5e-69 266.5 181 72.4
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.0e-69 266.2 178 72.5
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 2.6e-69 265.8 178 71.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.5e-69 265.0 178 70.2
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 7.6e-69 264.2 181 71.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.6e-69 264.2 190 67.4
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.0e-68 263.8 180 70.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.7e-68 263.1 192 67.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.9e-68 262.3 182 70.9
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.8e-68 261.9 181 68.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.8e-68 261.9 165 77.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.9e-68 261.5 190 68.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 6.5e-68 261.2 183 70.5
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.5e-68 261.2 183 70.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.5e-68 261.2 183 70.5
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 6.5e-68 261.2 186 68.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 6.5e-68 261.2 181 69.1
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 8.4e-68 260.8 192 65.6
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.1e-67 260.4 192 65.6
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-67 260.4 179 71.5
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.4e-67 260.0 179 69.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.4e-67 260.0 178 69.7
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.4e-67 260.0 183 68.9
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.4e-67 260.0 190 67.9
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.4e-67 260.0 182 68.1
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.9e-67 259.6 179 69.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.5e-67 259.2 184 69.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.5e-67 259.2 178 71.3
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 3.2e-67 258.8 182 68.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.2e-67 258.8 178 71.3
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 4.2e-67 258.5 178 71.3
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.2e-67 258.5 192 68.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.5e-67 258.1 191 67.5
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.1e-67 257.7 186 68.8
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 7.1e-67 257.7 179 70.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-66 256.5 182 69.8
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.6e-66 256.5 191 63.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-66 256.5 186 68.8
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.7e-66 255.8 178 72.5
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.5e-66 255.4 180 70.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.5e-66 255.4 179 68.7
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 3.5e-66 255.4 178 69.1
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-66 255.4 178 69.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 4.6e-66 255.0 191 67.0
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 6.0e-66 254.6 178 68.5
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 7.9e-66 254.2 174 70.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 7.9e-66 254.2 188 67.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 7.9e-66 254.2 197 64.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-65 253.8 183 65.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.3e-65 253.4 186 67.7
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.8e-65 253.1 193 66.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.3e-65 252.7 192 66.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.3e-65 252.7 192 66.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.3e-65 252.7 177 68.9
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.0e-65 252.3 183 68.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.9e-65 251.9 167 74.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 8.7e-65 250.8 182 68.1
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.7e-65 250.8 178 68.0
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 8.7e-65 250.8 188 66.5
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.1e-64 250.4 183 67.8
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.1e-64 250.4 184 67.9
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.1e-64 250.4 184 67.4
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.1e-64 250.4 178 68.0
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.9e-64 249.6 190 65.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.9e-64 249.6 201 63.2
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.3e-64 248.8 178 67.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 3.3e-64 248.8 184 66.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 3.3e-64 248.8 186 67.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.3e-64 248.4 179 69.3
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 5.7e-64 248.1 165 71.5
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.7e-64 248.1 190 65.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 5.7e-64 248.1 184 67.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 5.7e-64 248.1 174 70.1
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 7.4e-64 247.7 189 65.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 9.7e-64 247.3 191 64.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 9.7e-64 247.3 191 64.4
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 9.7e-64 247.3 191 64.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 9.7e-64 247.3 199 63.8
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.6e-63 246.5 181 66.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.8e-63 245.7 192 65.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.8e-63 245.7 192 60.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 2.8e-63 245.7 179 65.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.8e-63 245.7 180 67.2
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 3.7e-63 245.4 177 67.8
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 3.7e-63 245.4 191 63.4
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.8e-63 245.0 178 65.7
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 6.3e-63 244.6 183 66.1
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 6.3e-63 244.6 191 63.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.3e-63 244.6 173 69.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 6.3e-63 244.6 173 69.9
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.1e-62 241.9 178 66.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.1e-62 241.9 212 59.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.1e-62 241.9 183 66.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.1e-62 241.9 178 66.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.5e-61 240.0 193 63.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.0e-61 239.6 193 63.7
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.0e-61 239.6 164 71.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.5e-61 238.4 165 70.3
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 5.9e-61 238.0 181 68.0
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 7.6e-61 237.7 158 74.1
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.8e-60 235.3 188 64.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.5e-60 234.6 165 68.5
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.4e-59 233.4 196 60.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.2e-58 230.3 192 61.5
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.2e-58 230.3 181 65.2
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.6e-58 229.9 191 60.2
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 1.6e-58 229.9 178 61.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.1e-58 229.6 192 58.9
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 6.1e-58 228.0 192 59.9
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 2.3e-57 226.1 178 65.2
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 5.1e-57 224.9 161 65.8
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.7e-57 224.6 269 48.0
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 8.8e-57 224.2 178 61.8
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 9.7e-56 220.7 165 66.7
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-55 219.9 164 64.0
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.8e-55 219.2 164 65.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 4.8e-55 218.4 177 59.3
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.4e-54 216.1 170 64.7
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.4e-54 216.1 140 75.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.5e-51 204.9 131 75.6
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.7e-50 201.8 145 66.9
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 7.9e-50 201.1 173 57.8
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.3e-48 195.7 143 65.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.3e-46 188.3 191 53.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.0e-44 181.8 109 77.1
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.1e-43 180.6 127 65.4
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 4.2e-43 178.7 123 65.0
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-41 174.1 217 47.5
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-41 174.1 217 47.5
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 5.3e-38 161.8 145 52.4
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.5e-32 143.7 178 43.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-26 123.2 119 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 8.3e-23 111.3 106 50.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.7e-20 103.6 104 51.9
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.7e-18 95.5 174 32.2
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.4e-14 83.2 68 61.8
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.7e-12 77.0 66 62.1
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.3e-11 72.4 48 56.2
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.5e-08 63.9 49 65.3


User provided reference genes

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