Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.7e-71 272.7 156 100.0
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.2e-50 202.6 157 75.8
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 4.6e-48 194.9 158 75.3
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 7.9e-48 194.1 159 76.7
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.1e-40 169.5 158 55.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 7.9e-40 167.5 137 66.4
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.3e-38 161.8 138 57.2
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.8e-37 159.1 137 70.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 3.7e-37 158.7 138 56.5
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.8e-37 158.3 151 58.9
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 8.2e-37 157.5 151 57.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.8e-36 156.4 150 58.7
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.8e-36 156.4 144 59.7
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.1e-36 155.6 159 64.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.1e-36 155.6 147 51.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 4.1e-36 155.2 145 64.8
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 4.1e-36 155.2 144 52.8
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.1e-36 155.2 126 57.9
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 5.3e-36 154.8 132 58.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 5.3e-36 154.8 136 58.8
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 9.0e-36 154.1 137 56.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 9.0e-36 154.1 135 65.2
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.5e-35 153.3 87 73.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 2.0e-35 152.9 122 66.4
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.0e-35 152.9 151 53.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.6e-35 152.5 149 67.1
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.5e-35 151.8 141 66.7
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 4.5e-35 151.8 134 53.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 7.7e-35 151.0 105 66.7
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 7.7e-35 151.0 138 54.3
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 7.7e-35 151.0 148 64.2
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 7.7e-35 151.0 127 54.3
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 7.7e-35 151.0 133 68.4
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.0e-34 150.6 140 54.3
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-34 150.6 157 51.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.0e-34 150.6 157 63.1
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.3e-34 150.2 135 65.9
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.3e-34 150.2 137 65.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.3e-34 150.2 132 56.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-34 149.8 155 58.7
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 1.7e-34 149.8 142 63.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.2e-34 149.4 146 52.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.2e-34 149.4 137 56.2
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.2e-34 149.4 131 55.0
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 2.2e-34 149.4 155 55.5
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.2e-34 149.4 150 48.7
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.9e-34 149.1 134 54.5
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 3.8e-34 148.7 105 66.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.8e-34 148.7 103 65.0
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 3.8e-34 148.7 148 52.7
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 5.0e-34 148.3 141 54.6
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 5.0e-34 148.3 135 68.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 5.0e-34 148.3 131 52.7
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 6.5e-34 147.9 131 55.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 6.5e-34 147.9 138 64.5
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 6.5e-34 147.9 128 54.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 8.5e-34 147.5 133 54.1
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 8.5e-34 147.5 85 69.4
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.5e-34 147.5 104 65.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 8.5e-34 147.5 142 60.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 151 59.6
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 83 71.1
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.1e-33 147.1 137 67.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.4e-33 146.7 142 64.1
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.4e-33 146.7 146 55.5
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.4e-33 146.7 136 64.0
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.4e-33 146.7 91 63.7
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.9e-33 146.4 115 59.1
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-33 146.0 145 63.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-33 146.0 145 63.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-33 146.0 145 63.4
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.5e-33 146.0 154 52.6
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 3.2e-33 145.6 154 52.6
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 3.2e-33 145.6 154 52.6
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.2e-33 145.6 146 55.5
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.2e-33 145.6 132 65.2
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 4.2e-33 145.2 141 53.9
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 4.2e-33 145.2 95 67.4
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 4.2e-33 145.2 152 53.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 4.2e-33 145.2 157 47.1
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 5.5e-33 144.8 152 52.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 5.5e-33 144.8 137 64.2
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 5.5e-33 144.8 80 77.5
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 5.5e-33 144.8 159 50.9
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.5e-33 144.8 157 47.1
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 7.2e-33 144.4 105 61.0
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.2e-33 144.4 105 61.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 9.4e-33 144.1 142 64.1
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.2e-32 143.7 159 58.5
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.2e-32 143.7 87 70.1
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.6e-32 143.3 139 53.2
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.6e-32 143.3 129 54.3
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.1e-32 142.9 136 52.2
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.7e-32 142.5 138 64.5
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.6e-32 142.1 142 62.7
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 4.6e-32 141.7 140 52.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 6.1e-32 141.4 86 70.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 7.9e-32 141.0 90 67.8
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.0e-31 140.6 74 78.4
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.4e-31 140.2 74 79.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.8e-31 139.8 76 77.6
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.0e-31 139.0 153 50.3
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 3.9e-31 138.7 139 53.2
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 3.9e-31 138.7 136 58.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 8.8e-31 137.5 88 69.3
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.1e-30 137.1 74 78.4
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 5.7e-30 134.8 147 53.1
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 7.4e-30 134.4 84 71.4
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.4e-30 134.4 73 78.1
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.8e-29 131.7 148 50.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 2.0e-27 126.3 140 50.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 7.7e-27 124.4 74 74.3
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.4e-25 120.2 74 70.3
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.9e-25 119.8 68 75.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.2e-25 118.6 148 45.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 5.1e-23 111.7 124 47.6
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 2.6e-22 109.4 104 68.3
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.4e-22 107.8 164 43.3
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 7.4e-22 107.8 108 65.7
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.4e-22 107.8 159 36.5
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 9.7e-22 107.5 128 48.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 8.2e-21 104.4 100 70.0
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.4e-20 102.8 52 78.8
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 3.5e-19 99.0 75 56.0
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.9e-19 98.2 65 64.6
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.0e-18 97.4 53 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.5e-17 92.8 79 54.4
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 9.4e-17 90.9 90 52.2
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 4.7e-16 88.6 79 48.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.4e-15 87.0 82 50.0
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 8.8e-15 84.3 76 56.6
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 2.6e-14 82.8 89 44.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.4e-12 77.0 56 60.7
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 4.1e-12 75.5 93 60.2
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 9.1e-12 74.3 79 44.3
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.0e-10 70.9 55 60.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.7e-10 70.1 76 42.1
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 5.0e-10 68.6 82 62.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.7e-08 62.8 47 59.6
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 3.6e-08 62.4 38 68.4
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.3e-07 59.7 46 52.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 5.2e-07 58.5 45 53.3


User provided reference genes

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