Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 6.9e-115 417.5 244 100.0
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 3.5e-103 378.6 244 89.8
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 3.9e-102 375.2 253 87.4
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.7e-95 352.4 311 72.3
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 6.9e-91 337.8 246 76.0
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 2.0e-90 336.3 248 79.4
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 2.6e-90 335.9 246 76.4
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 4.5e-90 335.1 246 76.4
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 7.6e-90 334.3 246 81.7
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.2e-89 332.8 250 82.0
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.1e-88 330.5 246 78.9
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 3.2e-88 328.9 247 75.7
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 7.1e-88 327.8 247 76.1
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.2e-87 327.0 247 81.0
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.5e-87 325.5 248 78.2
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.0e-86 323.9 245 73.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 1.0e-86 323.9 244 65.6
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.8e-86 323.2 242 71.5
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.3e-86 322.8 244 65.6
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 3.0e-86 322.4 247 78.5
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 3.0e-86 322.4 242 72.7
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 8.7e-86 320.9 182 83.0
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 8.7e-86 320.9 247 80.6
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.1e-85 320.5 244 75.8
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 1.5e-85 320.1 182 84.1
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 3.3e-85 318.9 180 85.6
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 5.7e-85 318.2 245 72.7
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 7.4e-85 317.8 180 83.9
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 7.4e-85 317.8 254 76.4
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 9.7e-85 317.4 249 78.3
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 3.7e-84 315.5 243 76.5
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.7e-84 315.5 182 83.0
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 4.8e-84 315.1 180 83.3
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 4.8e-84 315.1 250 78.0
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 8.2e-84 314.3 249 68.3
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.1e-83 313.9 248 78.6
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 1.1e-83 313.9 246 72.0
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.8e-83 313.2 182 81.3
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 2.4e-83 312.8 177 84.2
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 3.1e-83 312.4 179 83.8
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 3.1e-83 312.4 277 65.7
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 5.3e-83 311.6 182 79.7
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 5.3e-83 311.6 249 78.7
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 9.0e-83 310.8 182 81.3
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.5e-82 310.1 177 83.6
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.0e-82 309.7 249 69.1
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 7.6e-82 307.8 182 79.1
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.3e-81 307.0 182 78.0
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 2.2e-81 306.2 243 73.7
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 3.8e-81 305.4 243 74.9
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 3.8e-81 305.4 182 78.6
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 5.0e-81 305.1 244 76.6
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 6.5e-81 304.7 213 69.5
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.1e-80 303.9 243 62.6
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 1.9e-80 303.1 182 78.0
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.2e-80 302.4 241 73.9
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 4.2e-80 302.0 182 76.9
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 7.2e-80 301.2 279 61.6
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 9.4e-80 300.8 243 73.3
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-79 300.4 279 63.4
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 3.6e-79 298.9 300 59.7
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 6.1e-79 298.1 182 75.8
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 7.9e-79 297.7 243 74.1
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.8e-78 296.6 181 77.9
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 3.0e-78 295.8 243 71.6
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 8.8e-78 294.3 168 81.5
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 1.1e-77 293.9 275 56.7
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.5e-77 293.5 179 77.7
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 4.3e-77 292.0 243 70.0
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 7.4e-77 291.2 243 70.0
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 3.7e-76 288.9 182 73.6
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 4.8e-76 288.5 163 81.6
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 6.3e-76 288.1 249 65.5
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 1.4e-75 287.0 273 65.9
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.4e-75 286.2 300 58.3
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.4e-74 282.3 170 80.0
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 4.5e-74 282.0 169 80.5
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.2e-73 279.6 271 58.3
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 6.1e-71 271.6 167 75.4
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.1e-69 267.3 196 68.4
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 2.0e-69 266.5 247 65.6
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.2e-68 263.1 212 62.7
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.2e-68 263.1 306 50.7
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.1e-67 258.8 164 75.6
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 2.0e-66 256.5 150 82.7
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.7e-65 253.4 145 82.1
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 8.5e-65 251.1 146 79.5
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 7.2e-64 248.1 151 76.2
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 7.2e-64 248.1 180 63.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.7e-63 245.4 183 62.8
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 5.2e-62 241.9 187 64.2
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 5.7e-61 238.4 199 61.8
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 1.3e-57 227.3 248 59.7
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.7e-57 226.9 281 61.2
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 3.8e-57 225.7 280 46.4
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.1e-56 224.2 256 65.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.2e-55 220.7 264 47.0
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.6e-55 220.3 125 84.8
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 5.2e-54 215.3 345 40.0
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 9.7e-53 211.1 169 81.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.5e-50 202.6 131 74.0
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 7.7e-50 201.4 154 66.2
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 3.2e-48 196.1 187 50.8
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 3.7e-44 182.6 115 75.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 5.5e-40 168.7 118 66.1
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 5.7e-37 158.7 113 66.4
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 9.8e-37 157.9 98 75.5
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 1.8e-35 153.7 145 58.6
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 3.4e-29 132.9 81 76.5
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 3.9e-25 119.4 165 66.1
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 5.0e-25 119.0 107 58.9
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-20 103.2 112 51.8
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 8.6e-17 91.7 120 63.3
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 1.5e-08 64.3 38 76.3
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 1.9e-08 63.9 37 78.4
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.8e-07 60.1 33 78.8
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 1.8e-06 57.4 29 89.7


User provided reference genes

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