Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 2.3e-78 295.8 183 100.0
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.0e-46 190.7 168 64.3
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 1.3e-46 190.3 171 69.6
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.7e-38 161.0 168 65.5
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 1.2e-31 140.6 161 52.2
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 1.6e-31 140.2 160 51.2
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.5e-31 139.0 164 52.4
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.5e-31 139.0 164 53.7
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 4.6e-31 138.7 160 51.2
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 5.1e-30 135.2 161 49.1
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 1.5e-29 133.7 161 48.4
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.5e-29 133.7 210 44.8
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.9e-29 133.3 164 51.8
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 3.3e-29 132.5 164 50.6
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 7.4e-29 131.3 163 49.7
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 9.6e-29 131.0 163 47.2
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.3e-28 130.6 197 44.7
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.8e-28 129.4 209 44.0
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 4.8e-28 128.6 164 47.6
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 4.0e-27 125.6 219 41.6
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 5.3e-27 125.2 161 47.2
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 6.9e-27 124.8 167 47.3
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 5.8e-26 121.7 162 47.5
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 7.6e-26 121.3 160 50.0
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 1.3e-25 120.6 160 45.6
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 1.7e-25 120.2 117 53.8
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 4.9e-25 118.6 111 54.1
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 8.4e-25 117.9 158 44.3
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 1.1e-24 117.5 160 45.0
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 1.9e-24 116.7 170 45.9
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 9.3e-24 114.4 162 46.9
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 9.3e-24 114.4 162 46.9
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 6.0e-23 111.7 192 41.7
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.0e-23 111.7 158 41.8
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 7.9e-23 111.3 164 47.6
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 6.7e-22 108.2 108 53.7
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 6.7e-22 108.2 108 53.7
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.1e-21 107.5 166 44.6
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 2.5e-21 106.3 162 43.8
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 3.3e-21 105.9 180 41.7
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.4e-21 104.8 114 50.9
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 7.4e-21 104.8 114 50.9
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 1.3e-20 104.0 186 44.6
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 1.3e-20 104.0 107 51.4
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 1.6e-20 103.6 94 59.6
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 2.8e-20 102.8 107 53.3
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 5.3e-19 98.6 76 72.4
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 6.9e-19 98.2 193 40.4
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.2e-17 93.2 122 43.4
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 2.2e-17 93.2 160 39.4
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 3.8e-17 92.4 159 40.3
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 4.9e-17 92.0 161 41.0
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 8.4e-17 91.3 107 45.8
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.2e-16 89.0 158 38.6
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 1.2e-15 87.4 168 37.5
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.3e-14 83.2 150 38.7
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 5.1e-14 82.0 155 39.4
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.1e-11 74.3 156 32.1
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.4e-11 73.9 152 34.9
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 5.3e-11 72.0 106 35.8
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 6.9e-11 71.6 40 75.0
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 2.6e-10 69.7 179 28.5
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.4e-10 69.3 120 30.8
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.4e-10 69.3 162 34.6
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 5.9e-10 68.6 166 29.5
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.0e-09 67.8 180 28.3
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.3e-09 67.4 179 27.9
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.7e-09 67.0 176 28.4
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.7e-09 67.0 164 31.1
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 1.7e-09 67.0 121 38.0
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.7e-09 67.0 147 30.6
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 2.2e-09 66.6 172 29.1
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.9e-09 66.2 112 32.1
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.8e-09 65.9 178 28.1
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.8e-09 65.9 179 27.9
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.0e-09 65.5 120 30.0
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.5e-09 64.7 141 31.2
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 8.5e-09 64.7 160 31.2
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 8.5e-09 64.7 173 31.2
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 1.9e-08 63.5 143 30.1
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.9e-08 63.5 180 27.8
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.5e-08 63.2 133 28.6
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.5e-08 63.2 125 31.2
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.5e-08 63.2 126 31.7
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 2.5e-08 63.2 123 30.9
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 2.5e-08 63.2 117 33.3
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 3.2e-08 62.8 175 28.0
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 3.2e-08 62.8 125 31.2
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.2e-08 62.8 125 31.2
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 4.2e-08 62.4 157 26.8
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.2e-08 62.4 149 32.9
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 5.5e-08 62.0 152 30.3
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 5.5e-08 62.0 181 28.7
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 5.5e-08 62.0 110 28.2
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 9.4e-08 61.2 201 27.4
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 9.4e-08 61.2 154 29.2
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.2e-07 60.8 140 29.3
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 1.6e-07 60.5 143 28.7
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.6e-07 60.5 129 31.8
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.6e-07 60.5 136 31.6
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.1e-07 60.1 180 28.9
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 7.9e-07 58.2 141 25.5
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 7.9e-07 58.2 174 27.0
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.8e-06 57.0 177 27.7
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.3e-06 56.6 180 24.4
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.3e-06 56.6 102 37.3
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 3.0e-06 56.2 169 25.4
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 3.0e-06 56.2 153 25.5
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 3.9e-06 55.8 149 25.5
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 3.9e-06 55.8 150 26.7
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 3.9e-06 55.8 150 25.3
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.9e-06 55.8 135 25.9
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 6.7e-06 55.1 178 25.8
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 6.7e-06 55.1 182 25.8
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.8e-06 54.7 135 27.4
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 8.8e-06 54.7 192 24.0
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 8.8e-06 54.7 168 24.4


User provided reference genes

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