Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.9e-223 778.9 393 100.0
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 2.0e-204 715.7 388 90.7
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.1e-202 709.9 388 90.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 4.1e-186 654.8 523 67.7
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 2.9e-163 578.9 383 73.4
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 5.4e-162 574.7 382 73.3
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 7.1e-162 574.3 382 74.1
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.2e-161 573.5 373 74.5
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 6.0e-161 571.2 372 76.6
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 6.8e-157 557.8 372 74.2
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.5e-156 556.6 379 71.2
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 2.6e-156 555.8 383 71.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.4e-156 555.4 384 71.1
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 5.8e-156 554.7 384 70.6
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 7.6e-156 554.3 384 70.8
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 3.8e-155 552.0 381 71.1
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.9e-155 551.6 386 72.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 4.9e-155 551.6 377 74.0
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 6.4e-155 551.2 362 73.8
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 2.4e-154 549.3 380 71.1
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 3.2e-154 548.9 377 73.5
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 4.1e-154 548.5 381 70.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.4e-154 548.1 384 70.3
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.1e-153 546.2 362 73.2
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 3.5e-153 545.4 385 69.1
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 4.6e-153 545.0 374 71.1
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.3e-152 543.5 362 73.2
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 1.3e-152 543.5 372 71.5
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.3e-152 543.5 387 68.5
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 2.3e-152 542.7 378 69.3
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 2.3e-152 542.7 380 70.0
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 3.0e-152 542.3 372 71.0
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 8.6e-152 540.8 404 67.6
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.5e-151 540.0 382 70.7
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.9e-151 539.7 378 69.0
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 4.3e-151 538.5 373 70.5
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 9.6e-151 537.3 374 70.9
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.2e-150 537.0 383 68.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.1e-150 536.2 381 67.7
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.8e-150 535.8 363 73.3
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 3.6e-150 535.4 382 69.6
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.0e-148 529.6 363 70.2
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 5.8e-148 528.1 362 70.2
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.7e-147 526.6 362 71.0
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 8.4e-147 524.2 434 62.2
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 2.4e-146 522.7 362 69.9
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.2e-146 521.9 386 70.5
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.7e-144 516.5 379 65.7
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 2.3e-144 516.2 363 69.1
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 3.0e-144 515.8 371 69.3
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.9e-144 515.4 390 66.2
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 5.6e-143 511.5 386 65.8
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 7.3e-143 511.1 414 63.8
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 9.6e-143 510.8 371 67.7
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.1e-142 509.6 385 68.3
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 8.1e-142 507.7 387 65.9
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 5.3e-141 505.0 377 65.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 9.0e-141 504.2 388 65.2
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.2e-140 503.8 385 65.5
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 4.5e-140 501.9 358 69.6
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 7.6e-140 501.1 390 64.9
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 7.6e-140 501.1 374 67.1
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.3e-139 500.4 361 69.3
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 4.9e-139 498.4 383 65.8
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.2e-138 495.7 383 65.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 7.1e-138 494.6 377 64.5
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 3.5e-137 492.3 386 61.9
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-136 490.7 383 65.3
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.5e-135 486.9 377 64.5
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.5e-135 486.9 381 64.6
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 7.4e-135 484.6 367 66.2
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 8.1e-134 481.1 362 66.3
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 8.1e-134 481.1 369 61.8
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.8e-133 479.9 374 63.4
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.8e-133 479.9 422 58.8
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 3.1e-133 479.2 363 66.4
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 2.6e-132 476.1 372 64.0
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 5.8e-132 474.9 362 65.5
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 5.8e-132 474.9 371 65.0
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 5.8e-132 474.9 444 57.4
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.7e-131 473.4 408 56.6
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 8.4e-131 471.1 385 62.1
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 3.5e-129 465.7 381 63.8
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.1e-127 460.7 374 62.3
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.6e-126 456.8 327 69.4
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.1e-126 456.4 343 66.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.1e-125 454.1 369 63.7
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 3.4e-124 449.1 293 74.7
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.8e-123 445.7 368 57.9
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-120 437.6 379 60.4
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.1e-119 434.1 293 71.7
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 5.7e-119 431.8 371 56.9
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 5.3e-117 425.2 322 67.7
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.8e-110 402.9 375 56.3
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 2.0e-108 396.7 287 67.6
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 1.3e-107 394.0 362 54.1
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.3e-104 383.3 265 72.1
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 5.3e-101 372.1 385 50.1
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.1e-97 360.1 374 54.0
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 8.5e-91 338.2 243 69.5
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 2.2e-86 323.6 223 73.5
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 2.0e-84 317.0 361 46.0
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.2e-74 282.7 240 62.5
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 4.3e-58 229.6 136 74.3
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 9.5e-58 228.4 167 68.3
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 2.1e-57 227.3 252 46.0
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 4.1e-53 213.0 135 71.1
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 2.3e-51 207.2 177 61.6
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.5e-47 192.2 248 46.8
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 4.7e-41 172.9 259 40.2
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.1e-40 171.8 119 71.4
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 4.4e-39 166.4 124 60.5
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.9e-38 162.9 150 54.7
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.3e-35 154.8 96 76.0
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.7e-35 154.5 296 38.9
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.1e-34 151.8 121 61.2
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 3.4e-31 140.2 204 41.7
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.7e-30 137.9 134 56.0
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 3.2e-29 133.7 87 65.5
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.0e-19 102.1 223 34.1
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 7.6e-15 85.9 77 50.6
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 2.4e-13 80.9 79 50.6
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 9.3e-13 79.0 98 46.9
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.1e-12 77.8 46 71.7
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.7e-12 77.4 77 50.6
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 2.7e-12 77.4 77 50.6
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 3.5e-12 77.0 56 58.9
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 1.0e-11 75.5 406 24.1
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 5.1e-11 73.2 53 58.5
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.4e-08 65.1 64 56.2


User provided reference genes

Program Settings