Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 5.3e-122 441.0 222 100.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.1e-90 335.5 219 78.1
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.0e-88 330.5 222 79.3
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.1e-87 327.0 218 76.6
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 5.7e-84 314.7 303 59.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.1e-58 229.2 219 55.7
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.2e-57 227.3 214 56.1
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.1e-55 220.7 219 53.9
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.3e-55 218.8 215 54.0
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 5.6e-55 218.4 214 54.2
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 9.5e-55 217.6 219 52.5
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.8e-54 216.1 213 54.5
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 4.7e-54 215.3 223 52.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 6.1e-54 214.9 221 56.1
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 8.0e-54 214.5 219 53.4
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 8.0e-54 214.5 214 53.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.0e-53 212.6 213 52.1
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.2e-53 211.8 219 52.5
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.2e-53 211.8 218 51.8
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 5.2e-53 211.8 213 52.1
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.9e-53 211.1 219 52.5
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.9e-53 211.1 221 53.4
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.2e-52 210.7 215 53.5
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.4e-52 209.1 216 55.6
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 9.8e-52 207.6 216 52.8
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.3e-51 207.2 218 53.2
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.9e-51 206.1 216 54.6
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.4e-51 204.9 215 52.6
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 8.3e-51 204.5 215 50.7
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 8.3e-51 204.5 215 52.1
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.8e-50 203.4 213 50.2
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.1e-50 202.2 221 52.9
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 5.4e-50 201.8 218 50.5
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.2e-49 200.7 215 51.2
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.2e-49 200.7 218 49.1
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.0e-49 199.9 221 52.0
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.7e-49 199.5 217 53.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 4.6e-49 198.7 211 51.2
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.9e-49 198.4 215 49.8
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 5.9e-49 198.4 216 50.9
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 5.9e-49 198.4 215 49.8
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.0e-48 196.1 215 51.6
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.9e-48 195.7 218 50.5
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.0e-48 195.3 221 52.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.1e-47 194.1 215 49.8
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.1e-47 194.1 215 50.2
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.5e-47 193.7 174 56.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-47 193.7 174 56.3
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.5e-47 193.7 215 52.1
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.9e-47 193.4 215 48.4
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.5e-47 193.0 215 48.4
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 7.3e-47 191.4 215 50.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.2e-46 190.7 216 50.0
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.2e-46 190.7 215 50.7
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.6e-46 190.3 219 48.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.6e-46 190.3 216 49.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 4.7e-46 188.7 230 45.7
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.1e-45 186.0 217 47.5
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 9.8e-44 181.0 178 50.6
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.7e-43 180.3 166 56.6
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.9e-43 179.5 171 52.0
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 4.9e-43 178.7 171 55.0
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.4e-42 176.4 222 46.8
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.2e-42 176.0 217 47.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.2e-42 176.0 219 45.2
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 4.1e-42 175.6 224 48.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.7e-40 170.2 226 46.5
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.7e-40 170.2 219 44.7
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.3e-40 169.9 215 47.0
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.1e-39 167.5 212 45.3
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.5e-39 167.2 220 45.9
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-39 166.8 178 51.7
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.5e-39 166.4 219 44.3
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 3.3e-39 166.0 215 45.1
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.3e-39 164.9 215 44.2
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 3.6e-38 162.5 217 47.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 4.7e-38 162.2 192 47.9
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.1e-37 161.0 220 45.0
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.4e-37 160.6 221 43.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.3e-37 159.8 160 56.2
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.4e-36 156.0 220 43.6
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.2e-35 153.3 222 42.3
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.9e-35 152.9 213 46.0
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 8.3e-35 151.4 168 50.6
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 1.9e-34 150.2 131 58.8
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 5.4e-34 148.7 215 42.3
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 7.1e-34 148.3 220 39.5
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 7.1e-34 148.3 215 40.5
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 4.6e-33 145.6 214 39.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 7.8e-33 144.8 139 54.7
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 7.8e-33 144.8 217 38.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.0e-32 144.4 129 54.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.3e-32 143.3 165 46.7
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 3.0e-32 142.9 182 46.2
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.6e-32 141.7 215 40.5
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 4.3e-31 139.0 177 44.1
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 7.3e-31 138.3 211 38.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.6e-30 137.1 168 47.6
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.8e-30 136.3 178 44.4
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.3e-29 133.3 215 38.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.3e-29 133.3 214 40.2
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.3e-29 133.3 195 39.5
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.3e-29 133.3 227 40.1
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 3.1e-29 132.9 214 39.7
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.5e-28 130.6 211 37.9
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.0e-28 130.2 178 46.1
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.6e-28 129.8 176 39.8
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.4e-28 129.4 184 42.4
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 5.8e-28 128.6 155 47.7
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 7.6e-28 128.3 211 39.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 7.6e-28 128.3 214 35.0
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.9e-28 127.9 142 50.0
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.3e-27 127.5 142 50.0
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.7e-27 127.1 170 37.6
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.7e-27 127.1 154 43.5
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.2e-27 126.7 201 39.3
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.2e-27 126.7 207 41.5
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.2e-27 126.7 140 48.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.9e-27 125.6 170 42.4
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.4e-27 125.2 135 49.6
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 6.4e-27 125.2 159 44.0
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 8.4e-27 124.8 191 41.9
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-26 124.0 172 40.1
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.9e-26 123.6 157 45.2
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.9e-26 123.6 133 49.6
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 3.2e-26 122.9 183 39.3
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.7e-25 119.8 119 53.8
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-25 119.4 204 39.7
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.6e-25 119.0 168 41.7
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 4.6e-25 119.0 217 37.8
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 5.1e-24 115.5 143 45.5
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 3.3e-23 112.8 140 44.3
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 7.3e-23 111.7 79 63.3
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.8e-22 109.8 118 50.8
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.6e-22 109.4 123 50.4
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.1e-22 108.2 79 62.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 8.1e-22 108.2 126 41.3
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.1e-21 107.8 143 42.7
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.4e-21 106.7 86 59.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.1e-21 106.3 131 42.7
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.0e-21 105.9 119 45.4
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.2e-19 100.1 213 34.7
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.9e-18 97.1 186 36.6
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.7e-17 93.2 94 54.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.6e-17 92.4 232 33.2
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 6.0e-17 92.0 130 40.0
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 6.0e-17 92.0 101 46.5
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.3e-16 90.9 81 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.3e-16 90.1 113 40.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.0e-16 89.7 138 38.4
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 2.1e-14 83.6 83 50.6
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 8.1e-14 81.6 87 50.6
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.1e-14 81.6 87 50.6
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 4.0e-13 79.3 96 44.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.2e-11 73.6 121 33.1
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 6.4e-11 72.0 78 48.7
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 3.5e-09 66.2 89 37.1
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 7.9e-09 65.1 117 33.3
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 1.3e-08 64.3 227 27.8
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 2.3e-08 63.5 73 49.3
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.3e-08 63.5 117 33.3
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.5e-07 60.8 89 39.3
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.3e-07 59.7 39 71.8
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 4.3e-07 59.3 41 58.5
Nn3g18490 Nelumbo nucifera HOM05D051960 ORTHO05D005244 2.8e-06 56.6 79 41.8
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 6.2e-06 55.5 97 28.9


User provided reference genes

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