Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 9.0e-28 126.7 91 100.0
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.2e-13 79.0 78 50.0
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 6.9e-12 73.9 83 48.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 6.9e-12 73.9 83 48.2
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.2e-11 73.2 79 49.4
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.2e-11 73.2 90 44.4
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.5e-11 72.8 88 47.7
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 1.5e-11 72.8 77 54.5
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 1.5e-11 72.8 80 45.0
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.6e-11 72.0 79 48.1
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 3.4e-11 71.6 82 45.1
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 3.4e-11 71.6 89 66.3
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.5e-11 71.2 80 45.0
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 5.9e-11 70.9 81 45.7
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 1.0e-10 70.1 89 65.2
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 1.0e-10 70.1 89 65.2
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.3e-10 69.7 78 44.9
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 1.3e-10 69.7 82 45.1
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 88 40.9
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 1.7e-10 69.3 82 45.1
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.7e-10 69.3 88 61.4
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.7e-10 69.3 88 61.4
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 3.8e-10 68.2 88 61.4
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 5.0e-10 67.8 83 43.4
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-09 66.6 82 58.5
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 1.1e-09 66.6 82 58.5
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 1.1e-09 66.6 84 44.0
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 1.1e-09 66.6 80 62.5
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.9e-09 65.9 82 57.3
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 2.5e-09 65.5 80 63.8
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.2e-09 64.7 83 43.4
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 4.2e-09 64.7 82 46.3
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 5.5e-09 64.3 80 61.2
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 5.5e-09 64.3 83 45.8
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.2e-08 63.2 79 40.5
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 1.6e-08 62.8 89 41.6
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 1.6e-08 62.8 85 40.0
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 2.7e-08 62.0 80 41.2
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.6e-08 61.6 83 43.4
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 4.7e-08 61.2 83 67.5
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 6.1e-08 60.8 79 41.8
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 6.1e-08 60.8 83 43.4
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 6.1e-08 60.8 83 43.4
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 1.0e-07 60.1 84 39.3
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 1.4e-07 59.7 84 57.1
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 3.9e-07 58.2 83 39.8
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.1e-07 57.8 87 47.1
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 6.7e-07 57.4 69 43.5
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 8.8e-07 57.0 88 52.3
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 1.1e-06 56.6 83 63.9
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 1.1e-06 56.6 83 63.9
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 1.1e-06 56.6 83 63.9
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 1.1e-06 56.6 83 63.9
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 1.1e-06 56.6 38 63.2
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 2.0e-06 55.8 88 40.9
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 2.0e-06 55.8 88 40.9
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 2.0e-06 55.8 84 66.7
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 2.0e-06 55.8 81 40.7
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 2.6e-06 55.5 87 55.2
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 2.6e-06 55.5 82 41.5
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 2.6e-06 55.5 88 51.1
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 4.4e-06 54.7 84 36.9
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 4.4e-06 54.7 85 40.0
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 7.4e-06 53.9 82 65.9
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 7.4e-06 53.9 85 38.8
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 9.7e-06 53.5 85 40.0


User provided reference genes

Program Settings