Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 2.1e-112 409.1 208 100.0
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.6e-78 295.8 209 73.7
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.4e-68 263.5 209 66.5
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 4.3e-41 172.2 196 49.0
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 2.7e-35 152.9 189 45.0
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 2.7e-35 152.9 219 44.3
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 2.3e-34 149.8 187 45.5
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.6e-34 148.3 195 46.2
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.5e-33 147.1 193 45.6
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.3e-33 146.0 183 47.0
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.1e-32 143.3 195 43.6
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 2.1e-32 143.3 195 43.6
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.8e-31 140.2 195 42.1
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 3.1e-31 139.4 199 44.2
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.4e-30 136.0 176 44.9
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.3e-29 134.0 177 45.8
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 2.2e-29 133.3 202 40.6
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.9e-29 132.9 177 44.6
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 2.9e-29 132.9 193 44.6
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.9e-29 132.9 181 42.5
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 4.9e-29 132.1 209 39.7
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 8.4e-29 131.3 215 40.5
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.1e-28 131.0 214 41.1
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 1.4e-28 130.6 181 42.0
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 7.1e-28 128.3 185 40.5
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 7.1e-28 128.3 176 42.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 9.2e-28 127.9 177 43.5
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 9.2e-28 127.9 196 39.8
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.2e-27 127.5 200 41.5
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.7e-27 126.3 192 41.1
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 4.6e-27 125.6 189 39.2
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 6.0e-27 125.2 180 40.6
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 6.0e-27 125.2 198 42.4
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.3e-26 124.0 180 40.6
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.3e-26 123.2 200 38.0
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 3.9e-26 122.5 187 40.6
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 3.9e-26 122.5 194 36.6
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 8.7e-26 121.3 179 41.9
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.1e-25 120.9 176 38.1
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.5e-25 120.6 194 38.1
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.5e-25 120.6 198 39.9
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.9e-25 120.2 190 38.4
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.5e-25 119.8 166 43.4
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 3.3e-25 119.4 174 37.4
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 3.3e-25 119.4 201 37.3
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.3e-25 119.4 191 40.3
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 7.3e-25 118.2 179 38.0
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 1.2e-24 117.5 206 35.9
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.1e-24 116.7 199 39.2
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.8e-24 116.3 189 40.7
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 2.8e-24 116.3 196 40.3
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 8.1e-24 114.8 185 40.0
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.1e-23 114.4 179 38.0
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.8e-23 113.6 208 38.0
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 2.4e-23 113.2 191 35.6
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.4e-23 113.2 183 38.8
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 3.1e-23 112.8 204 34.8
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 3.1e-23 112.8 174 37.4
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 4.0e-23 112.5 189 37.6
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 4.0e-23 112.5 197 38.1
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 5.3e-23 112.1 205 35.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 5.3e-23 112.1 206 38.8
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 9.0e-23 111.3 174 37.4
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 9.0e-23 111.3 178 37.6
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 9.0e-23 111.3 196 34.7
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-22 110.9 183 39.3
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-22 110.9 183 39.3
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.2e-22 110.9 183 39.3
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.2e-22 110.9 196 35.2
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.5e-22 110.5 195 36.4
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.5e-22 110.5 195 36.4
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 2.0e-22 110.2 194 39.7
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 2.6e-22 109.8 196 35.2
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 3.4e-22 109.4 185 37.3
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 4.4e-22 109.0 176 40.3
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 4.4e-22 109.0 190 36.3
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 4.4e-22 109.0 180 40.0
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 5.8e-22 108.6 190 36.3
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 7.6e-22 108.2 192 37.0
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.3e-21 107.5 189 35.4
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.3e-21 107.5 199 37.2
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 1.7e-21 107.1 192 37.5
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 1.7e-21 107.1 176 38.1
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.7e-21 107.1 175 37.7
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.2e-21 106.7 175 40.0
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 3.8e-21 105.9 141 44.0
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 4.9e-21 105.5 141 44.7
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 6.4e-21 105.1 177 37.9
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.1e-20 104.4 184 35.9
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.4e-20 104.0 184 35.3
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 1.9e-20 103.6 203 34.0
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-20 103.6 172 37.2
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.9e-20 103.6 172 37.2
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 2.4e-20 103.2 194 32.5
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 3.2e-20 102.8 176 40.3
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.2e-20 102.8 176 40.3
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 3.2e-20 102.8 197 34.5
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 4.2e-20 102.4 176 39.2
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 4.2e-20 102.4 176 37.5
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.2e-20 102.4 172 36.6
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 4.2e-20 102.4 175 38.3
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 5.4e-20 102.1 183 37.7
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 5.4e-20 102.1 183 37.7
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 7.1e-20 101.7 192 37.0
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 7.1e-20 101.7 202 36.1
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 7.1e-20 101.7 202 36.1
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 7.1e-20 101.7 174 35.6
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 9.3e-20 101.3 185 35.7
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 9.3e-20 101.3 170 37.6
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.2e-19 100.9 176 36.4
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 2.1e-19 100.1 199 34.7
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.7e-19 99.8 185 35.7
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 3.5e-19 99.4 185 36.8
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.5e-19 99.4 183 36.1
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 3.5e-19 99.4 181 34.8
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.5e-19 99.4 197 35.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.6e-19 99.0 176 39.2
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 4.6e-19 99.0 194 37.1
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.6e-19 99.0 186 37.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 6.0e-19 98.6 188 36.2
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 6.0e-19 98.6 188 36.2
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.0e-18 97.8 185 36.2
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 1.0e-18 97.8 189 33.3
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.0e-18 97.8 209 32.5
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.3e-18 97.4 174 34.5
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.7e-18 97.1 218 32.1
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.3e-18 96.7 159 37.7
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 3.0e-18 96.3 183 37.2
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 3.9e-18 95.9 192 37.0
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 3.9e-18 95.9 171 37.4
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 3.9e-18 95.9 171 37.4
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 3.9e-18 95.9 198 34.3
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.9e-18 95.9 172 34.3
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 3.9e-18 95.9 188 35.1
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 5.1e-18 95.5 198 35.9
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.1e-17 94.4 182 34.1
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.3e-17 92.8 180 35.6
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 4.3e-17 92.4 159 36.5
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 5.6e-17 92.0 198 35.9
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 7.3e-17 91.7 166 36.7
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 7.3e-17 91.7 186 33.9
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 7.3e-17 91.7 185 34.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 1.3e-16 90.9 186 34.4
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.3e-16 90.9 202 33.2
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.6e-16 90.5 173 35.8
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.1e-16 90.1 185 34.1
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 2.1e-16 90.1 185 34.1
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.8e-16 89.7 187 34.2
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 3.6e-16 89.4 211 33.6
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 3.6e-16 89.4 162 37.7
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 3.6e-16 89.4 188 35.6
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 6.2e-16 88.6 190 33.2
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 8.1e-16 88.2 174 31.6
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 1.4e-15 87.4 169 33.7
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.8e-15 87.0 210 32.9
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.1e-15 86.3 211 33.2
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 4.0e-15 85.9 179 36.3
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 5.3e-15 85.5 214 31.8
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 6.9e-15 85.1 220 30.0
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 6.9e-15 85.1 175 32.6
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 9.0e-15 84.7 199 33.2
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 1.5e-14 84.0 171 31.0
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 2.0e-14 83.6 175 35.4
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.0e-14 83.6 179 33.5
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 2.6e-14 83.2 169 34.9
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 2.6e-14 83.2 169 34.9
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 2.6e-14 83.2 179 31.3
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.8e-14 82.0 192 33.3
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 9.9e-14 81.3 175 35.4
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.2e-13 80.1 194 28.9
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 2.2e-13 80.1 187 33.2
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.8e-13 79.3 184 32.6
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 4.9e-13 79.0 144 34.7
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.9e-12 77.0 193 32.6
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 3.2e-12 76.3 199 32.2
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 9.3e-12 74.7 158 36.1
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-11 74.3 176 35.2
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 1.2e-11 74.3 176 35.2
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.6e-11 73.9 184 31.5
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 4.6e-11 72.4 205 30.2
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-10 70.9 96 37.5
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-10 70.5 178 36.0
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.8e-10 70.5 183 31.7
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.9e-10 69.3 107 36.4
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.9e-09 67.0 89 36.0
SEGI_18442 Sequoiadendron giganteum HOM05D003268 ORTHO05D003719 2.8e-08 63.2 198 26.8
ECA236G0017 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.8e-07 60.5 172 30.8
Zm00001eb417400 Zea mays HOM05D003268 ORTHO05D003719 2.4e-07 60.1 152 30.9
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 9.0e-07 58.2 175 30.9
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 9.9e-06 54.7 107 33.6


User provided reference genes

Program Settings