Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.1e-195 686.4 333 100.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.2e-159 564.3 339 80.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.8e-151 538.9 339 78.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.4e-149 531.6 341 76.2
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 6.4e-132 474.6 337 70.6
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 8.8e-97 357.8 346 55.5
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 2.8e-95 352.8 341 54.8
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.8e-94 350.1 341 54.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.6e-90 335.9 339 52.2
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.4e-89 334.0 338 53.6
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.0e-89 332.8 345 51.3
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 8.8e-89 331.3 343 50.7
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 8.8e-89 331.3 356 51.4
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.6e-88 329.7 338 53.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.8e-86 323.6 339 52.5
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.7e-84 317.0 345 49.0
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.5e-84 314.7 343 51.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.1e-83 314.3 349 51.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.2e-83 312.4 345 49.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.7e-82 309.7 344 49.4
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 6.1e-82 308.5 342 47.7
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.0e-81 307.8 344 49.7
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.0e-81 307.8 340 49.1
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.0e-81 307.8 350 48.3
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 5.2e-81 305.4 285 56.1
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 8.8e-81 304.7 346 48.8
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.7e-79 300.4 339 47.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 6.3e-79 298.5 341 48.7
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-78 297.7 344 47.7
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.8e-78 297.0 344 45.9
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.4e-78 296.6 345 47.5
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.1e-78 295.8 339 47.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 7.0e-78 295.0 340 48.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 9.1e-78 294.7 340 45.3
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 9.1e-78 294.7 361 46.5
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.2e-77 294.3 340 45.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 7.7e-77 291.6 343 47.5
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.3e-76 290.8 345 47.5
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.7e-76 290.4 340 45.9
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.7e-76 290.4 340 45.6
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.3e-76 290.0 345 46.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.0e-76 288.9 344 47.7
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.0e-76 288.9 349 46.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.6e-76 288.5 313 50.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.1e-75 287.7 341 46.6
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.5e-75 286.6 337 46.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.1e-74 283.5 344 47.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.1e-74 283.5 331 46.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.4e-73 280.8 313 49.5
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.3e-73 280.0 344 44.5
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 8.9e-73 278.1 348 44.3
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-72 277.7 344 44.8
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.5e-72 277.3 343 43.4
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.6e-72 276.6 340 44.1
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.4e-72 276.2 341 46.6
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.4e-72 276.2 345 45.2
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.4e-72 275.8 340 45.3
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.5e-72 275.0 345 45.2
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 9.8e-72 274.6 339 45.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 9.8e-72 274.6 345 45.2
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.3e-71 274.2 343 42.9
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-71 273.9 347 43.8
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.2e-71 273.5 341 44.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.7e-71 272.7 341 45.7
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 4.9e-71 272.3 347 44.4
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.1e-70 271.2 340 44.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.1e-70 271.2 343 43.4
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.8e-70 270.4 347 44.1
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.4e-70 270.0 343 42.9
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.2e-70 269.6 346 42.8
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.2e-69 267.7 283 50.9
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.2e-69 267.7 331 44.4
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-69 267.3 339 44.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.7e-69 266.5 350 44.6
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.7e-69 266.5 343 42.3
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.7e-69 266.5 339 43.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.9e-69 265.4 347 42.1
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.9e-69 265.4 344 43.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.8e-69 265.0 338 44.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.8e-69 265.0 338 44.1
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.0e-68 264.6 347 41.5
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.1e-67 261.2 345 43.2
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.3e-67 259.6 327 42.8
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.3e-67 259.2 325 43.1
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 4.3e-67 259.2 345 42.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.5e-67 258.1 341 43.4
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.6e-66 257.3 347 41.2
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 6.1e-66 255.4 341 42.5
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 8.0e-66 255.0 294 46.9
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.0e-65 254.6 338 42.6
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.4e-65 254.2 347 39.8
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.4e-65 254.2 331 44.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.1e-65 253.1 345 42.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.8e-65 251.9 344 41.3
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 6.8e-65 251.9 344 44.8
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.2e-64 251.1 348 41.4
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-64 251.1 345 44.3
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.5e-64 250.8 340 43.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.7e-63 247.3 344 39.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-63 246.9 293 45.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.7e-63 246.1 293 45.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.4e-63 245.4 275 47.6
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.4e-62 244.2 335 44.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.9e-62 243.8 340 42.6
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.1e-62 242.7 306 44.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 7.0e-62 241.9 329 41.0
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-61 241.1 342 40.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-61 241.1 344 39.8
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.0e-61 238.8 345 39.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.0e-60 238.0 344 41.6
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.3e-60 236.9 278 47.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.5e-59 234.2 342 38.9
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.9e-59 233.8 356 40.2
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.5e-59 231.5 328 42.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.5e-59 231.5 340 39.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.1e-58 230.3 260 48.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 4.7e-58 229.2 345 38.3
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-57 228.0 339 38.1
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.1e-57 226.5 278 43.2
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.7e-55 219.5 292 42.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.4e-54 216.9 353 42.2
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.1e-53 213.8 320 39.7
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.7e-53 213.4 342 36.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.6e-53 212.6 339 38.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.6e-52 208.8 328 39.0
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 9.5e-51 204.9 285 42.5
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.6e-50 203.0 339 35.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.6e-50 203.0 346 37.6
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.1e-49 199.9 338 38.8
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 5.2e-49 199.1 279 40.9
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.7e-47 194.1 196 50.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-45 187.6 345 36.2
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.3e-43 179.9 137 62.8
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.1e-42 177.2 329 35.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.8e-42 176.8 247 38.9
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.9e-39 166.8 137 59.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.9e-38 164.1 129 60.5
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.4e-38 163.7 210 39.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.1e-38 162.2 335 34.0
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 7.8e-37 158.7 212 38.2
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.7e-36 155.2 217 40.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 7.6e-32 142.1 338 33.7
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 3.3e-27 126.7 159 44.0
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 4.8e-26 122.9 102 61.8
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.4e-25 121.3 282 33.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 3.7e-10 70.1 276 25.4
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 4.8e-10 69.7 144 34.0
Mapoly0031s0052 Marchantia polymorpha HOM05D024261 ORTHO05D026617 6.5e-07 59.3 48 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 1.4e-06 58.2 163 28.8


User provided reference genes

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