Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.9e-145 518.5 251 100.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.7e-116 421.8 245 82.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.1e-115 418.3 253 79.4
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.1e-106 389.4 288 70.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.5e-93 346.7 212 78.3
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.2e-92 342.8 256 65.2
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 6.4e-92 341.3 256 64.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.3e-91 337.4 248 65.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-89 333.2 255 65.9
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.1e-88 330.5 250 66.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-88 330.1 255 65.1
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.9e-88 329.7 257 62.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.3e-88 328.9 242 65.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.3e-88 328.9 257 63.8
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 4.3e-88 328.6 255 65.1
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.3e-88 328.6 255 65.1
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-88 328.6 256 62.9
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.3e-88 328.6 255 66.3
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.6e-88 328.2 256 62.5
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.6e-88 327.4 248 64.1
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-87 327.0 256 62.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.8e-87 325.9 247 63.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.2e-87 324.7 256 62.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 8.1e-87 324.3 253 65.2
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-86 323.6 259 62.2
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.3e-86 321.6 250 63.6
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.2e-85 320.5 252 64.3
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.0e-85 319.7 261 59.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.0e-85 319.7 251 63.3
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 5.8e-85 318.2 252 63.1
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 9.9e-85 317.4 244 63.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-84 317.0 251 61.8
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-84 317.0 249 61.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.7e-84 316.6 262 61.8
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.2e-84 316.2 250 60.8
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.9e-84 315.8 253 60.5
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 8.4e-84 314.3 255 62.7
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-83 313.2 256 60.9
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.9e-83 313.2 251 61.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.2e-83 312.4 255 61.6
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 4.2e-83 312.0 258 61.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.1e-83 311.2 255 61.2
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 7.1e-83 311.2 263 59.7
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 9.3e-83 310.8 210 71.0
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-82 310.5 256 60.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.7e-82 309.3 258 60.9
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.6e-82 308.5 256 60.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 6.0e-82 308.1 249 62.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.0e-82 308.1 243 62.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.9e-82 307.8 179 77.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-81 307.4 249 62.2
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.8e-81 306.6 249 61.0
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.3e-81 306.2 185 75.7
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.3e-81 306.2 261 59.8
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 3.9e-81 305.4 251 58.2
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.9e-81 305.4 181 77.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 6.7e-81 304.7 251 59.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 8.7e-81 304.3 197 72.1
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 8.7e-81 304.3 257 58.4
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.5e-80 303.5 257 58.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.3e-80 302.4 257 60.3
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.3e-80 302.4 259 58.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.3e-80 302.4 242 62.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 5.6e-80 301.6 254 59.1
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 7.4e-80 301.2 256 59.8
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.3e-79 300.4 256 57.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.1e-79 299.7 257 59.5
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.1e-79 299.7 252 57.5
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.1e-79 299.7 264 55.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.1e-79 299.7 258 57.4
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.8e-79 298.5 260 57.7
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.8e-79 298.5 252 59.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 8.1e-79 297.7 264 55.7
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-78 297.4 257 58.8
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.4e-78 297.0 257 59.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.4e-78 296.2 263 56.7
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 3.1e-78 295.8 258 58.9
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.1e-78 295.8 249 59.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 4.0e-78 295.4 257 58.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 5.3e-78 295.0 191 69.6
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-77 293.9 249 58.6
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.5e-77 293.5 265 54.3
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 255 57.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 260 58.5
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 7.6e-77 291.2 179 72.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.3e-76 290.4 175 75.4
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.3e-76 290.4 222 61.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-76 289.7 261 55.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.9e-76 288.5 255 61.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.4e-75 287.0 249 59.4
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.5e-75 286.2 245 58.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-75 286.2 255 58.0
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-75 286.2 255 58.0
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 4.2e-75 285.4 252 58.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-74 283.9 253 57.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.6e-74 283.5 172 73.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.6e-74 283.5 172 73.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.7e-74 282.7 247 59.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.5e-74 282.3 248 56.5
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.6e-74 282.0 251 59.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.0e-73 280.8 206 65.5
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.3e-73 280.4 246 57.7
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 5.1e-73 278.5 246 58.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 5.1e-73 278.5 260 56.2
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 6.7e-73 278.1 260 55.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.1e-72 277.3 249 54.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.9e-72 276.6 187 68.4
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 4.3e-72 275.4 250 52.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 5.7e-72 275.0 175 72.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 7.4e-72 274.6 248 54.8
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.6e-72 274.2 249 55.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.6e-72 274.2 249 53.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.1e-71 273.1 179 68.2
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.8e-71 271.9 177 69.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 8.2e-71 271.2 255 52.9
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.4e-70 269.6 252 53.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.1e-70 269.2 195 64.6
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-69 266.2 150 82.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 3.8e-68 262.3 248 54.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 6.5e-68 261.5 214 61.7
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 8.4e-68 261.2 242 56.6
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-67 259.2 256 53.1
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.5e-67 258.5 260 52.3
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 9.3e-67 257.7 214 61.2
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 3.9e-65 252.3 234 57.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 4.3e-64 248.8 164 72.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.9e-60 236.1 192 59.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.8e-60 235.7 211 55.9
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.1e-59 234.2 256 50.4
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.4e-59 233.8 211 53.6
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.9e-59 233.4 137 77.4
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-57 227.3 249 49.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.1e-54 217.6 164 61.6
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.8e-54 216.9 258 45.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.5e-53 213.8 207 48.8
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.4e-53 212.6 152 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.7e-52 210.3 170 58.8
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.2e-52 209.9 167 57.5
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.8e-52 209.1 251 44.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.7e-50 203.0 167 56.3
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-50 203.0 144 64.6
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.7e-50 202.2 252 45.6
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.0e-49 199.5 174 52.3
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.8e-47 193.0 111 79.3
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-35 152.9 143 53.8
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 4.7e-34 149.1 90 72.2
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.3e-31 138.7 209 41.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 4.1e-30 136.0 84 73.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.5e-29 132.5 93 63.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.5e-27 126.7 121 51.2
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.2e-26 124.4 88 65.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 2.1e-26 123.6 213 32.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.3e-23 114.4 63 81.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-23 114.0 73 69.9
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.4e-22 109.0 78 64.1
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 7.0e-22 108.6 141 38.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.6e-20 101.7 65 69.2
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-17 94.4 67 61.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-14 82.0 86 45.3
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.0e-12 78.2 99 40.4
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.0e-12 78.2 52 67.3
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.3e-12 77.0 46 73.9
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.6e-12 75.1 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 8.6e-12 75.1 46 71.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.3e-11 72.8 39 76.9
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.5e-08 64.3 43 69.8
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.3e-07 61.2 36 69.4
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 4.9e-07 59.3 36 66.7


User provided reference genes

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