Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 2291.9 1138 100.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1990.3 1069 93.0
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1945.6 1100 89.9
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1854.3 1199 81.5
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1783.8 1074 82.4
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1783.1 1076 82.2
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1781.9 1075 82.8
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1768.8 1075 81.9
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1766.5 1073 82.5
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1765.0 1076 82.1
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1763.4 1074 81.8
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1763.4 1075 81.6
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1763.0 1074 81.6
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1761.9 1073 82.2
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1760.3 1073 80.9
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1758.8 1073 82.1
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1753.8 1074 80.6
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1751.5 1076 81.1
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1750.7 1100 78.8
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1749.9 1075 81.1
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1749.6 1074 80.9
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1749.2 1074 81.2
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1748.0 1073 81.6
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1746.9 1108 79.0
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1746.9 1074 80.7
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1744.9 1075 80.9
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1744.2 1110 79.5
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1743.8 1074 80.8
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1743.0 1075 80.7
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1742.2 1071 80.6
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1741.1 1074 80.6
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1738.8 1074 80.6
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1737.6 1079 80.2
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1736.9 1074 80.7
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1735.7 1059 81.4
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1732.2 1074 80.0
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1730.7 1076 79.6
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1729.5 1072 81.1
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1728.4 1074 79.9
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1726.1 1078 79.0
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1725.7 1073 79.5
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1724.5 1073 79.8
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1723.8 1073 79.7
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1719.5 1077 79.4
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1718.4 1076 79.8
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1716.8 1101 78.1
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1716.4 1078 79.9
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1714.1 1078 79.7
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1713.0 1080 79.0
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1713.0 1074 79.7
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1711.4 1073 79.2
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1709.5 1078 79.5
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1708.0 1075 79.3
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1706.0 1075 78.8
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1704.1 1078 79.2
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1694.9 1079 77.4
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1692.6 1079 77.2
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1689.5 1077 78.1
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1689.5 1178 73.3
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1689.1 1085 77.7
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1688.7 1075 78.9
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1687.9 1082 77.8
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1679.5 1086 77.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1679.1 1079 77.1
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1678.3 1079 77.6
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1674.4 1085 77.7
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1671.0 1077 77.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1668.3 1077 77.1
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1666.0 1077 77.8
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1664.8 1074 77.6
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1660.2 1083 76.8
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1659.4 1083 76.7
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1658.7 1027 80.8
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1657.9 1078 76.5
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1656.3 1083 76.5
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1656.3 1083 76.5
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1655.6 1081 76.3
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1655.6 1084 76.3
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1655.2 1083 76.5
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1655.2 1081 76.7
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1654.8 1078 76.5
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1654.8 1078 76.6
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1651.3 1078 76.8
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1647.9 1074 75.1
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1647.1 1075 76.1
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1639.0 1078 76.3
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1637.9 1123 73.6
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1627.8 1077 75.8
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1622.4 1072 74.8
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1616.3 1103 73.9
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1605.9 1074 74.5
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1605.5 1074 76.4
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1604.0 1077 75.2
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1593.9 1078 74.8
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1568.1 1025 76.0
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1567.0 1047 74.0
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1561.6 1077 73.6
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1560.8 1072 72.6
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1547.3 1069 71.8
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1501.1 1070 72.8
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1480.3 964 76.8
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1468.4 959 77.4
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1467.2 947 77.2
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1430.6 1499 53.8
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1427.2 956 75.0
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1406.7 1072 65.3
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1358.6 1072 63.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1341.3 1070 63.4
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1330.1 827 80.8
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1310.4 1081 61.5
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1309.7 849 78.0
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1302.7 888 74.5
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1223.4 783 77.5
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1192.6 954 63.8
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1096.3 1077 56.5
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 2.0e-310 1069.3 1080 55.4
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.9e-308 1062.8 763 70.5
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 3.6e-299 1031.9 1025 56.3
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 1.2e-297 1026.9 922 60.4
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 3.7e-296 1021.9 670 77.5
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.2e-238 830.9 530 78.1
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 3.9e-213 746.1 535 70.5
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 2.6e-201 706.8 534 68.2
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.1e-194 684.9 531 67.4
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.8e-179 633.6 699 49.8
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 3.5e-177 626.7 1026 41.4
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 3.0e-165 587.0 447 67.6
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 9.2e-162 575.5 368 77.2
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.2e-142 511.9 638 44.2
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.9e-115 420.2 315 69.2
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.9e-107 394.4 266 73.7
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.4e-101 375.6 419 52.7
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 7.6e-100 369.8 306 61.4
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 2.5e-98 364.8 207 85.5
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 7.7e-92 343.2 212 78.3
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 2.6e-84 318.2 183 81.4
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 7.9e-81 306.6 199 75.4
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 3.9e-80 304.3 177 80.8
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 5.2e-80 303.9 345 50.1
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 4.5e-60 237.7 443 37.7
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.7e-57 227.6 170 65.9
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 2.0e-52 212.2 137 71.5
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 5.0e-51 207.6 123 79.7
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.1e-49 200.7 127 73.2
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.6e-47 195.3 133 70.7
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 1.1e-42 179.9 446 32.5
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 4.3e-42 177.9 441 32.7
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.1e-41 175.6 132 59.1
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 3.1e-40 171.8 436 32.3
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.2e-31 143.3 113 56.6
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 9.2e-29 133.7 108 63.9
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 9.2e-29 133.7 108 63.9
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 9.2e-29 133.7 108 63.9
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 3.5e-28 131.7 97 68.0
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 1.3e-27 129.8 127 55.9
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.8e-22 111.7 76 68.4
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 8.4e-22 110.5 78 67.9
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-21 110.2 73 69.9
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.9e-21 109.4 73 69.9
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.1e-21 108.2 76 65.8
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.4e-21 107.8 142 48.6
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 9.2e-21 107.1 76 65.8
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 3.9e-19 101.7 59 79.7
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 2.1e-17 95.9 49 87.8
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 5.8e-15 87.8 93 55.9
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 9.3e-13 80.5 44 84.1
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 1.6e-12 79.7 44 79.5
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 1.3e-11 76.6 63 66.7
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 3.9e-11 75.1 156 33.3
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.9e-10 72.8 123 39.0
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 4.8e-09 68.2 70 50.0
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 2.6e-07 62.4 71 49.3
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 4.5e-07 61.6 42 66.7


User provided reference genes

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