Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.7e-272 941.4 478 100.0
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.9e-226 788.5 480 85.0
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 2.4e-220 768.8 496 81.7
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 4.6e-216 754.6 551 73.7
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.1e-208 729.2 465 82.4
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 2.0e-179 632.9 433 76.2
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.5e-174 616.7 439 73.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 3.7e-173 612.1 424 73.8
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.3e-170 603.6 438 73.5
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 3.8e-170 602.1 423 73.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.5e-169 599.4 436 72.7
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 7.2e-169 597.8 453 70.0
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.6e-168 596.7 429 72.0
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 2.1e-168 596.3 481 67.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 8.0e-168 594.3 431 71.9
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.4e-167 593.6 427 72.8
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.8e-167 593.2 417 74.6
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.0e-166 589.7 485 66.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.0e-166 589.7 427 72.6
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 7.5e-166 587.8 423 71.6
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 7.5e-166 587.8 455 69.2
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.7e-165 586.6 414 75.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-165 586.6 414 75.1
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 3.7e-165 585.5 424 72.6
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 8.3e-165 584.3 429 72.3
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.1e-164 582.0 430 71.9
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 5.4e-164 581.6 439 69.2
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 7.0e-164 581.3 418 71.8
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 7.0e-164 581.3 460 68.3
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.6e-163 578.6 414 74.2
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 4.6e-163 578.6 413 70.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.3e-162 577.0 465 67.7
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.7e-162 576.6 472 66.3
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.9e-162 575.5 420 72.1
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 6.6e-162 574.7 415 71.8
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 8.6e-162 574.3 454 68.1
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.1e-161 573.9 411 70.8
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-161 573.2 417 71.9
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.5e-161 572.8 420 71.2
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 9.5e-161 570.9 426 70.7
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 9.5e-161 570.9 442 69.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 9.5e-161 570.9 439 69.5
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 1.6e-160 570.1 460 67.2
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.6e-160 570.1 407 70.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.6e-160 570.1 441 68.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 6.8e-159 564.7 431 68.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.9e-159 564.3 467 65.7
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.9e-159 564.3 467 65.7
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.5e-158 563.5 427 69.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 4.4e-158 562.0 449 68.8
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 7.5e-158 561.2 417 71.0
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.2e-157 559.7 445 67.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 2.2e-157 559.7 442 69.7
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.2e-157 559.7 430 70.5
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.2e-157 559.7 430 70.5
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 2.2e-157 559.7 445 66.3
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.9e-157 559.3 423 69.5
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.4e-156 557.0 424 70.0
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.9e-156 556.6 442 68.8
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.0e-155 553.1 414 70.0
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.7e-155 552.7 446 68.4
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 6.0e-155 551.6 435 67.8
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.0e-154 550.8 432 69.7
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.7e-154 550.1 437 68.6
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 8.6e-154 547.7 447 65.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.3e-153 545.8 422 70.4
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 9.5e-153 544.3 416 66.6
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.1e-152 543.1 423 67.8
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 5.2e-151 538.5 433 66.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.5e-150 537.0 439 65.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 2.0e-150 536.6 430 66.3
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.0e-150 536.6 474 62.0
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 4.4e-150 535.4 424 65.8
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 4.4e-150 535.4 419 68.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 4.4e-150 535.4 437 64.8
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-149 533.5 429 67.4
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.7e-149 533.5 429 67.4
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.9e-149 532.7 545 56.5
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.1e-148 530.8 426 67.6
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.4e-148 530.4 420 66.4
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 4.1e-148 528.9 422 67.1
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 5.4e-148 528.5 450 64.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.3e-146 523.9 427 65.3
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.0e-146 522.7 422 66.6
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.0e-146 522.7 422 66.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 5.1e-146 521.9 418 66.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 8.6e-146 521.2 412 67.0
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.1e-145 520.8 418 66.3
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.5e-145 520.4 409 67.7
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.9e-145 520.0 425 67.5
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.2e-144 517.3 419 65.9
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.2e-141 506.5 420 65.2
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.2e-140 502.7 431 64.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 9.2e-140 501.1 469 59.3
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-138 497.7 394 66.2
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 2.3e-138 496.5 441 63.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.9e-138 495.7 448 61.6
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.3e-137 492.7 430 63.3
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.6e-136 490.3 376 69.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 7.6e-134 481.5 522 52.7
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 6.0e-131 471.9 484 56.2
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 3.0e-130 469.5 453 57.4
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 3.3e-129 466.1 408 59.3
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.1e-128 463.4 445 58.4
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.8e-128 463.0 414 62.8
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.4e-127 460.7 408 61.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.1e-127 459.5 409 60.4
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.6e-126 456.4 410 57.8
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.8e-126 455.3 410 57.8
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.2e-124 449.1 384 65.1
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 7.1e-124 448.4 358 67.9
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 6.2e-120 435.3 415 58.8
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 5.3e-119 432.2 472 53.2
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.5e-118 430.6 318 73.0
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.2e-117 426.8 417 57.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.2e-116 422.5 412 58.3
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.0e-114 416.4 422 52.8
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.5e-113 413.3 387 58.1
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.4e-111 406.8 370 58.4
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.4e-108 397.5 362 59.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.1e-105 387.9 386 57.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.6e-105 384.8 379 54.6
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.6e-105 384.8 375 55.5
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 6.3e-104 382.1 377 59.2
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.3e-101 374.4 379 57.0
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 9.3e-100 368.2 579 42.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.2e-92 343.2 352 56.0
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.7e-89 332.4 404 48.8
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.5e-86 324.3 297 62.3
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.5e-84 317.0 334 54.5
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 7.9e-83 312.0 408 46.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.0e-82 311.6 326 53.4
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 7.2e-76 288.9 274 60.2
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-71 275.0 304 53.9
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 2.7e-67 260.4 292 52.7
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.0e-65 254.2 290 49.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 5.5e-60 236.1 121 95.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 3.7e-56 223.4 246 52.8
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 8.3e-56 222.2 220 58.6
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.5e-49 201.4 191 57.1
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.0e-46 191.0 323 36.2
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.7e-45 188.0 103 86.4
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.4e-42 178.3 102 88.2
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-38 165.2 132 68.2
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.9e-36 157.9 136 66.9
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 3.7e-32 143.7 109 66.1
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 4.9e-32 143.3 119 67.2
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 3.6e-27 127.1 170 50.0
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-24 117.9 163 49.1
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 3.8e-24 117.1 81 74.1
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.4e-23 114.4 82 76.8
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 4.1e-23 113.6 72 72.2
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 9.2e-23 112.5 69 73.9
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 8.6e-21 105.9 203 39.9
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-20 104.8 58 87.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.4e-18 98.6 66 71.2
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.4e-17 93.6 59 67.8
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.8e-17 93.2 51 84.3
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 7.6e-17 92.8 144 43.8
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 3.8e-16 90.5 73 56.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-15 87.8 51 82.4
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-14 85.5 51 80.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.6e-14 83.6 55 74.5
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 6.0e-14 83.2 60 70.0
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.0e-13 80.9 48 77.1
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 8.7e-13 79.3 51 76.5
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.5e-12 78.6 45 82.2
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-09 68.9 46 73.9
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.3e-08 65.5 44 63.6
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.3e-08 65.5 75 53.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 6.4e-08 63.2 36 83.3
Prupe.6G106900 Prunus persica HOM05D003179 ORTHO05D003563 2.4e-07 61.2 309 23.0
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 2.4e-07 61.2 308 22.7
PSO063G1289 Papaver somniferum HOM05D003179 ORTHO05D003563 1.6e-06 58.5 307 22.1
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 2.1e-06 58.2 71 45.1
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 2.7e-06 57.8 327 22.0
MD03G1124200 Malus domestica HOM05D003179 ORTHO05D003563 2.7e-06 57.8 309 22.3
PSO339G5507 Papaver somniferum HOM05D003179 ORTHO05D003563 3.5e-06 57.4 307 21.8
Nn2g13754 Nelumbo nucifera HOM05D003179 ORTHO05D003563 4.6e-06 57.0 307 23.1


User provided reference genes

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