Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 3.5e-58 228.0 112 100.0
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.7e-39 164.9 128 70.3
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 9.1e-38 160.2 120 71.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.5e-37 159.5 120 70.8
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-36 156.0 126 67.5
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.7e-17 90.9 72 62.5
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.3e-16 88.6 117 47.9
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.4e-16 88.2 106 43.4
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.4e-16 88.2 106 43.4
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.7e-16 87.8 109 49.5
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 7.5e-16 87.4 127 44.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 9.7e-16 87.0 73 57.5
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 9.7e-16 87.0 72 58.3
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.7e-16 87.0 106 43.4
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.3e-15 86.7 98 56.1
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.7e-15 85.1 102 50.0
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 8.2e-15 84.0 113 48.7
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 8.2e-15 84.0 117 40.2
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-14 83.6 119 41.2
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-14 83.2 125 43.2
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-14 83.2 75 54.7
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.4e-14 83.2 99 48.5
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.3e-14 81.3 109 45.9
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 5.3e-14 81.3 116 41.4
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.0e-14 80.9 120 43.3
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-14 80.5 109 45.0
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-13 80.1 108 48.1
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.2e-13 80.1 118 43.2
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.6e-13 79.7 129 42.6
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.7e-13 79.0 116 45.7
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.5e-13 78.2 100 51.0
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 5.9e-13 77.8 129 42.6
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-13 77.4 107 42.1
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-13 77.4 108 42.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.7e-13 77.4 93 47.3
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.0e-12 77.0 117 41.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.3e-12 76.6 99 48.5
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.3e-12 76.6 103 50.5
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 1.3e-12 76.6 109 41.3
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.7e-12 76.3 116 47.4
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.7e-12 76.3 119 45.4
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.2e-12 75.9 103 45.6
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.2e-12 75.9 107 42.1
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-12 75.9 108 46.3
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.9e-12 75.5 97 48.5
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.9e-12 75.5 113 44.2
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.8e-12 75.1 98 51.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 5.0e-12 74.7 127 41.7
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 5.0e-12 74.7 107 43.9
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 6.5e-12 74.3 79 49.4
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 6.5e-12 74.3 118 42.4
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.5e-12 73.9 109 45.9
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.1e-11 73.6 103 46.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.5e-11 73.2 73 50.7
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.5e-11 73.2 70 57.1
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.9e-11 72.8 107 46.7
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 2.5e-11 72.4 122 41.0
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.5e-11 72.4 70 54.3
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 3.2e-11 72.0 73 52.1
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 4.2e-11 71.6 96 43.8
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 5.5e-11 71.2 111 42.3
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 5.5e-11 71.2 94 44.7
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 7.2e-11 70.9 72 51.4
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.4e-11 70.5 70 51.4
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.2e-10 70.1 70 51.4
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-10 70.1 70 51.4
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-10 70.1 70 51.4
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.2e-10 70.1 124 35.5
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-10 70.1 130 38.5
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.2e-10 70.1 141 35.5
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.2e-10 70.1 70 52.9
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 2.1e-10 69.3 119 38.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-10 69.3 74 47.3
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.6e-10 68.6 81 44.4
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 3.6e-10 68.6 115 38.3
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 3.6e-10 68.6 115 38.3
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.6e-10 68.6 119 37.0
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 4.7e-10 68.2 71 49.3
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 4.7e-10 68.2 85 45.9
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.1e-10 67.8 78 52.6
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 6.1e-10 67.8 70 51.4
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 6.1e-10 67.8 86 44.2
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.0e-10 67.4 78 52.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.0e-10 67.4 78 52.6
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.0e-09 67.0 74 44.6
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-09 66.6 56 57.1
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.4e-09 66.6 109 41.3
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.8e-09 66.2 70 50.0
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.8e-09 66.2 107 40.2
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 3.0e-09 65.5 91 44.0
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 3.0e-09 65.5 88 40.9
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 4.0e-09 65.1 115 37.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 4.0e-09 65.1 127 37.8
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 4.0e-09 65.1 70 48.6
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 4.0e-09 65.1 88 40.9
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.2e-09 64.7 70 47.1
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 6.8e-09 64.3 116 37.9
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 6.8e-09 64.3 80 43.8
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 8.8e-09 63.9 73 49.3
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.8e-09 63.9 58 55.2
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.8e-09 63.9 58 55.2
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 78 41.0
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-08 62.8 101 41.6
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 96 39.6
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.6e-08 62.4 86 44.2
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.4e-08 62.0 89 44.9
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 81 46.9
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.4e-08 62.0 116 38.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 4.4e-08 61.6 71 47.9
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 5.7e-08 61.2 112 39.3
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.7e-08 61.2 74 47.3
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 5.7e-08 61.2 54 57.4
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 7.5e-08 60.8 76 48.7
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 7.5e-08 60.8 76 48.7
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 7.5e-08 60.8 58 50.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.8e-08 60.5 81 45.7
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 9.8e-08 60.5 100 40.0
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.7e-07 59.7 91 42.9
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-07 59.7 69 47.8
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.8e-07 58.9 81 43.2
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.8e-07 58.9 69 44.9
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.7e-07 58.5 114 39.5
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.7e-07 58.5 74 43.2
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 4.8e-07 58.2 74 43.2
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.3e-07 57.8 81 44.4
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 6.3e-07 57.8 89 40.4
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 8.3e-07 57.4 92 40.2
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-06 57.0 88 42.0
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.8e-06 56.2 117 38.5
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 1.8e-06 56.2 109 35.8
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.4e-06 55.8 109 34.9
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.4e-06 55.8 73 43.8
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 2.4e-06 55.8 95 38.9
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.4e-06 55.8 74 41.9
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 3.1e-06 55.5 55 54.5
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 4.1e-06 55.1 55 52.7
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 4.1e-06 55.1 55 52.7
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 5.4e-06 54.7 55 52.7
PGSC0003DMG400027332 Solanum tuberosum HOM05D021137 ORTHO05D004438 5.4e-06 54.7 85 38.8
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 7.0e-06 54.3 62 46.8
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 7.0e-06 54.3 62 46.8


User provided reference genes

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