Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 0.0e+00 1298.9 670 100.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 0.0e+00 1110.9 750 81.7
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 9.8e-289 996.5 749 74.2
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.8e-227 792.3 770 58.6
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 5.0e-224 781.6 767 57.8
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 3.0e-221 772.3 767 57.4
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.1e-221 771.5 754 58.5
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.5e-220 769.2 766 57.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 3.3e-220 768.8 753 57.5
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 4.3e-220 768.5 760 57.2
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 5.7e-220 768.1 762 56.8
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.8e-219 765.0 761 56.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 8.2e-219 764.2 761 56.0
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 4.5e-217 758.4 752 57.6
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.4e-215 753.4 743 57.1
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 7.2e-215 751.1 725 58.3
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.0e-213 747.3 732 57.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.3e-213 746.1 742 55.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 4.4e-212 741.9 720 57.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 5.7e-212 741.5 756 56.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 7.4e-212 741.1 743 55.7
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 7.4e-212 741.1 753 55.6
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 9.7e-212 740.7 789 54.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.2e-211 739.6 755 55.0
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.4e-210 736.9 759 54.2
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.3e-210 734.9 749 54.6
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.2e-209 733.8 736 55.6
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.6e-209 732.6 759 55.1
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 4.5e-209 731.9 748 55.6
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-208 730.7 811 53.4
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 1.7e-208 729.9 754 56.2
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.9e-208 729.2 728 55.4
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 5.0e-208 728.4 745 54.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.0e-208 728.4 777 54.6
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.1e-207 727.2 731 55.5
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 3.2e-207 725.7 742 54.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 7.2e-207 724.5 801 53.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.7e-206 722.6 757 54.6
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 3.6e-206 722.2 770 53.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.1e-206 721.5 751 55.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.8e-205 719.9 751 55.3
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 4.4e-204 715.3 781 52.5
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 9.1e-202 707.6 763 53.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.8e-200 702.2 747 53.4
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.8e-200 702.2 734 54.9
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 6.5e-200 701.4 749 54.9
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 6.5e-200 701.4 742 52.8
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 5.5e-199 698.4 767 53.3
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 5.2e-197 691.8 795 50.3
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 2.6e-196 689.5 728 52.7
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.7e-195 686.8 762 51.7
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.7e-195 685.6 756 51.6
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.6e-193 680.2 735 52.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 3.5e-193 679.1 786 52.0
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 5.0e-192 675.2 709 52.8
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 8.5e-192 674.5 762 52.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.1e-191 674.1 765 51.1
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 3.2e-191 672.5 745 51.9
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.5e-191 671.8 824 50.2
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.2e-190 670.6 737 51.0
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 2.7e-190 669.5 664 55.9
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.5e-188 663.7 751 50.2
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.8e-186 656.8 755 50.5
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.5e-185 652.5 546 69.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 7.7e-185 651.4 781 49.7
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 7.7e-185 651.4 703 52.6
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 8.6e-184 647.9 771 48.6
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 4.7e-182 642.1 716 50.4
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.4e-181 640.6 771 48.4
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.3e-181 639.8 781 49.2
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.5e-180 634.8 721 49.9
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 9.8e-180 634.4 732 49.3
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 6.4e-179 631.7 769 48.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.2e-178 629.4 778 46.7
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 5.4e-178 628.6 708 49.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.2e-177 627.5 709 49.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.6e-177 627.1 705 49.6
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 2.7e-177 626.3 740 51.2
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 4.6e-177 625.5 716 48.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.0e-176 622.1 697 49.6
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.9e-175 620.2 912 45.1
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.3e-175 618.2 719 49.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.1e-174 616.7 685 50.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.4e-172 609.4 721 49.2
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.2e-171 606.7 718 48.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.1e-170 604.4 721 47.2
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 8.6e-168 594.7 779 45.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 7.3e-167 591.7 751 46.5
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.6e-166 590.5 747 47.8
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.3e-165 586.6 398 78.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.6e-164 583.2 747 47.7
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.6e-151 538.9 640 51.2
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 6.2e-150 535.4 738 44.7
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 8.1e-150 535.0 621 50.7
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.0e-144 518.1 687 45.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.8e-141 507.3 434 61.5
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 7.6e-140 501.9 725 43.9
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 7.6e-140 501.9 725 43.9
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 7.6e-140 501.9 725 43.9
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.1e-138 498.0 738 41.3
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 7.9e-137 491.9 571 48.3
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.5e-135 487.6 516 56.6
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 3.5e-129 466.5 511 52.3
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 2.4e-125 453.8 681 43.2
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 6.0e-121 439.1 827 36.0
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 8.7e-120 435.3 578 43.6
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.9e-119 434.1 707 38.9
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.3e-118 431.4 441 53.7
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.1e-117 428.3 499 49.7
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 2.4e-117 427.2 617 44.6
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.4e-106 391.3 559 42.8
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 2.7e-84 317.4 498 41.8
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.4e-79 300.4 260 60.4
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.2e-60 238.8 233 57.9
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.3e-56 224.6 178 64.6
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.7e-51 208.4 334 40.4
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.7e-46 190.7 168 58.3
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.9e-38 163.7 114 74.6
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.4e-37 160.2 162 51.9
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 8.6e-35 152.9 142 55.6
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.1e-32 146.0 189 44.4
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 7.6e-31 139.8 134 54.5
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.3e-27 129.0 79 78.5
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.7e-27 128.6 219 36.5
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.1e-27 127.1 118 59.3
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 6.6e-27 126.7 78 78.2
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 5.3e-24 117.1 143 41.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 9.9e-23 112.8 88 64.8
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 4.9e-22 110.5 122 48.4
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-18 98.2 149 38.3
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.8e-17 94.7 86 52.3
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 2.8e-17 94.7 86 52.3
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 9.0e-16 89.7 57 73.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.9e-14 84.7 321 25.5
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.9e-12 76.6 271 24.0
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.3e-11 75.9 154 30.5
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.6e-07 61.6 70 52.9
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 2.9e-06 58.2 65 50.8


User provided reference genes

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