Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 3.9e-188 661.4 350 100.0
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 5.4e-113 411.8 407 61.4
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.6e-104 382.1 406 59.1
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 8.4e-98 361.3 406 57.6
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 2.9e-90 336.3 403 56.3
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.6e-32 144.4 238 42.4
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 6.1e-32 142.5 394 34.0
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.2e-30 138.3 415 32.0
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 5.7e-30 136.0 320 38.1
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 5.7e-30 136.0 217 44.7
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 9.7e-30 135.2 385 34.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.7e-29 134.4 232 43.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.2e-29 134.0 305 37.4
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.7e-29 133.3 371 37.7
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.7e-29 133.3 234 43.2
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 6.3e-29 132.5 414 33.6
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.3e-29 132.5 307 37.1
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 8.3e-29 132.1 199 45.2
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.3e-29 132.1 382 34.3
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.4e-28 131.3 381 33.9
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.8e-28 131.0 237 42.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.4e-28 130.6 391 33.8
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 3.1e-28 130.2 272 36.8
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.1e-28 129.8 215 42.8
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.0e-27 127.5 297 33.7
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 7.7e-27 125.6 260 40.8
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.3e-26 124.8 174 48.3
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 1.3e-26 124.8 330 35.8
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.1e-25 121.7 390 35.4
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 4.2e-25 119.8 420 31.2
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.3e-23 114.0 376 33.2
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.0e-23 113.6 396 32.3
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.0e-23 113.2 356 34.0
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.0e-23 113.2 356 34.3
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 8.8e-23 112.1 237 39.7
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.2e-22 111.7 430 31.2
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.4e-22 109.8 344 33.1
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 9.8e-22 108.6 417 32.9
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.7e-21 107.8 190 41.1
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 2.2e-21 107.5 196 40.8
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 6.3e-21 105.9 201 39.3
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 8.3e-21 105.5 321 34.3
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.8e-20 104.4 388 31.2
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 4.1e-20 103.2 364 27.2
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.1e-20 103.2 356 32.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.0e-20 102.4 206 39.8
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 9.1e-20 102.1 411 28.5
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.6e-19 101.3 403 31.0
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.0e-19 100.9 356 32.0
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 4.5e-19 99.8 374 31.0
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.7e-19 99.0 157 39.5
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 2.3e-18 97.4 365 28.2
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 2.3e-18 97.4 420 30.0
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.9e-18 97.1 413 30.0
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 5.0e-18 96.3 222 37.8
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.6e-18 95.9 347 26.8
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.1e-17 95.1 327 30.3
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.5e-17 94.0 411 28.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 1.6e-16 91.3 217 36.9
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.8e-16 90.5 381 28.9
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 2.8e-16 90.5 326 28.8
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 2.8e-16 90.5 326 28.8
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.7e-16 89.7 173 36.4
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 4.7e-16 89.7 250 31.6
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 4.7e-16 89.7 336 27.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 6.1e-16 89.4 281 31.7
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 6.1e-16 89.4 204 35.3
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.4e-15 88.2 285 30.9
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 3.0e-15 87.0 409 26.4
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 8.9e-15 85.5 265 35.1
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 8.9e-15 85.5 382 27.2
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.2e-14 85.1 205 35.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.5e-14 84.7 214 33.6
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.0e-14 84.3 277 28.2
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.6e-14 84.0 227 31.3
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.4e-14 83.6 411 25.3
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.4e-14 83.2 286 32.2
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 9.8e-14 82.0 374 27.5
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.3e-13 81.6 354 28.2
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 1.3e-13 81.6 355 28.7
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 2.2e-13 80.9 377 25.7
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.2e-13 80.9 158 36.1
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.2e-13 80.9 174 37.4
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.7e-13 80.1 212 34.0
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 3.7e-13 80.1 382 27.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 8.3e-13 79.0 392 28.1
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-12 78.6 209 33.0
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.4e-12 78.2 208 31.7
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.4e-12 78.2 210 28.1
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.8e-12 77.8 382 28.8
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 5.4e-12 76.3 304 27.3
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 7.0e-12 75.9 235 31.1
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.2e-12 75.5 239 31.4
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 9.2e-12 75.5 212 32.5
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 9.2e-12 75.5 399 29.8
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 9.2e-12 75.5 300 26.7
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 9.2e-12 75.5 149 34.9
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.0e-11 74.3 169 34.3
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 2.7e-11 73.9 348 27.6
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.5e-11 73.6 381 29.4
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 4.5e-11 73.2 313 29.1
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 4.5e-11 73.2 370 29.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.5e-11 73.2 246 30.5
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.8e-11 72.4 229 31.0
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.0e-10 72.0 363 28.7
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.3e-10 71.6 185 31.4
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 1.7e-10 71.2 215 31.6
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 1.7e-10 71.2 369 30.4
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 3.9e-10 70.1 146 32.2
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-10 70.1 146 32.2
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 3.9e-10 70.1 280 28.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.0e-10 69.7 216 28.7
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 5.0e-10 69.7 298 29.9
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.6e-10 69.3 162 30.9
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 6.6e-10 69.3 237 32.1
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 8.6e-10 68.9 395 27.8
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 8.6e-10 68.9 376 25.0
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 8.6e-10 68.9 373 24.4
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.6e-10 68.9 160 30.6
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 1.1e-09 68.6 165 32.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.5e-09 68.2 292 26.7
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.5e-09 68.2 122 38.5
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.9e-09 67.8 399 29.3
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.9e-09 67.8 379 28.8
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.9e-09 67.8 379 28.8
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.9e-09 67.8 383 24.0
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.9e-09 67.8 255 29.8
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.9e-09 67.8 214 30.8
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 1.9e-09 67.8 212 31.6
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.5e-09 67.4 164 31.1
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.5e-09 67.4 152 29.6
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 3.3e-09 67.0 266 28.2
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 3.3e-09 67.0 266 30.5
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.3e-09 66.6 375 28.5
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 4.3e-09 66.6 366 27.6
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.6e-09 66.2 217 29.0
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 7.3e-09 65.9 213 28.2
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 9.5e-09 65.5 374 27.8
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.2e-08 65.1 347 25.9
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.2e-08 65.1 211 28.0
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.6e-08 64.7 229 30.6
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 2.1e-08 64.3 218 30.3
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.1e-08 64.3 376 27.7
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.7e-08 63.2 333 24.9
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 6.1e-08 62.8 363 24.0
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 6.1e-08 62.8 305 24.9
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 8.0e-08 62.4 218 29.4
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 8.0e-08 62.4 336 25.6
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 8.0e-08 62.4 207 29.5
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.0e-07 62.0 123 34.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 1.0e-07 62.0 123 34.1
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.3e-07 60.8 224 29.5
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.3e-07 60.8 225 28.9
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 4.0e-07 60.1 210 29.5
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 5.2e-07 59.7 159 30.2
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 5.2e-07 59.7 129 32.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 2.0e-06 57.8 227 30.4
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 2.0e-06 57.8 351 29.3
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 5.8e-06 56.2 120 30.8
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 7.5e-06 55.8 193 29.5


User provided reference genes

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