Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 5.7e-151 537.7 304 100.0
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 1.8e-112 409.8 350 72.0
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.7e-110 403.3 306 70.3
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.3e-107 393.7 412 60.0
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.6e-71 273.1 353 52.4
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 4.9e-54 215.7 320 44.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.8e-48 197.2 258 46.5
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 2.4e-48 196.8 302 44.4
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 9.0e-48 194.9 313 41.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.0e-47 193.7 278 48.2
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 2.6e-47 193.4 288 44.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 3.8e-46 189.5 312 43.3
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.2e-44 184.5 348 40.2
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 4.6e-44 182.6 303 43.2
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 7.9e-44 181.8 321 43.6
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.0e-43 181.4 347 40.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-43 178.7 298 42.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-43 178.7 298 42.6
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-42 177.2 286 43.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 9.6e-42 174.9 267 46.4
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 9.6e-42 174.9 293 43.3
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 2.1e-41 173.7 291 43.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 4.8e-41 172.6 304 43.8
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 9.0e-40 168.3 281 42.0
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.8e-39 165.6 264 45.1
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 7.6e-39 165.2 319 42.9
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.3e-38 164.5 287 41.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.2e-38 163.7 285 40.7
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 3.2e-37 159.8 297 40.1
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 5.5e-37 159.1 358 35.8
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 7.2e-37 158.7 300 42.0
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 7.2e-37 158.7 315 39.7
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.2e-36 157.9 297 40.4
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 1.6e-36 157.5 278 40.3
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.5e-36 156.4 258 41.9
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 4.6e-36 156.0 306 37.3
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 7.9e-36 155.2 309 39.5
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.0e-35 154.8 325 37.8
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.3e-35 154.5 297 40.4
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.9e-34 150.6 305 38.4
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.3e-34 149.8 274 38.7
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 3.3e-34 149.8 304 39.1
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.3e-34 149.8 311 37.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.6e-33 147.5 258 41.1
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 8.2e-33 145.2 274 39.4
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 8.2e-33 145.2 246 43.1
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.1e-32 144.8 255 40.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.8e-32 144.1 299 39.1
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.4e-32 143.7 317 37.2
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.1e-32 142.9 351 36.5
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 4.1e-32 142.9 299 37.1
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 4.1e-32 142.9 302 40.4
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 6.9e-32 142.1 301 39.9
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 6.9e-32 142.1 298 39.6
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 6.9e-32 142.1 317 37.5
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-31 141.4 244 40.6
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.2e-31 141.4 321 36.4
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.2e-31 141.4 273 40.3
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.0e-31 140.6 368 36.1
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 4.5e-31 139.4 243 39.9
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 4.5e-31 139.4 209 46.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 7.7e-31 138.7 286 38.5
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-30 137.5 329 35.3
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.5e-30 135.6 252 39.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-29 134.8 248 40.3
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.4e-29 134.4 306 36.9
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.5e-29 133.7 277 38.3
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.2e-29 133.3 254 38.2
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.2e-28 131.3 303 36.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.1e-28 130.6 281 39.1
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 2.7e-28 130.2 263 36.5
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 3.6e-28 129.8 295 37.3
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 6.1e-28 129.0 183 44.8
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 7.9e-28 128.6 307 37.5
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 7.9e-28 128.6 287 35.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.0e-27 128.3 313 33.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.4e-27 127.9 265 36.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.8e-27 127.5 255 40.0
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.8e-27 127.5 264 40.2
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 2.3e-27 127.1 273 37.7
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-27 126.7 157 47.8
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.9e-27 126.3 243 39.1
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 5.1e-27 125.9 221 40.7
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 6.7e-27 125.6 314 36.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.5e-26 124.4 301 36.2
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 2.5e-26 123.6 266 38.0
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 3.3e-26 123.2 166 48.2
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 4.3e-26 122.9 254 37.8
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.3e-25 121.3 296 35.1
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.2e-25 120.6 253 37.2
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 4.8e-25 119.4 280 36.4
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 4.8e-25 119.4 152 47.4
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.3e-25 119.0 206 41.3
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.3e-25 119.0 206 41.3
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.4e-24 117.9 295 36.3
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.8e-24 117.5 166 44.6
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 4.1e-24 116.3 287 37.6
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.3e-24 115.9 293 34.8
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 6.9e-24 115.5 306 37.6
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-23 114.8 303 37.3
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.5e-23 114.4 383 29.0
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 3.4e-23 113.2 247 34.0
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.8e-22 109.8 281 34.5
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 8.5e-22 108.6 266 34.6
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 8.5e-22 108.6 165 43.6
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 5.5e-21 105.9 278 32.4
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.1e-20 104.0 315 34.9
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.1e-20 104.0 134 46.3
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 3.6e-20 103.2 316 34.2
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 4.7e-20 102.8 138 47.1
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 7.9e-20 102.1 273 34.8
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 3.0e-19 100.1 167 41.3
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.9e-19 99.8 145 45.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 5.1e-19 99.4 234 36.3
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 8.8e-19 98.6 162 38.9
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.0e-18 97.4 172 40.7
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 2.6e-18 97.1 198 39.4
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 5.7e-18 95.9 195 39.5
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.8e-16 90.9 90 54.4
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.2e-15 88.2 124 42.7
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-15 87.8 122 45.1
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.3e-14 84.7 79 58.2
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 5.0e-14 82.8 270 34.4
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 9.4e-13 78.6 199 36.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 3.6e-12 76.6 282 29.1
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 1.0e-11 75.1 62 66.1
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.0e-11 75.1 348 31.6
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.8e-11 74.3 262 30.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.8e-11 74.3 300 27.3
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 4.1e-08 63.2 63 50.8
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 7.0e-08 62.4 204 31.4
Haze_10420 Corylus avellana HOM05D002938 ORTHO05D002074 1.0e-06 58.5 140 35.7
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.2e-06 57.4 319 26.6
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 2.9e-06 57.0 232 30.6
Haze_10425 Corylus avellana HOM05D002938 ORTHO05D002074 3.8e-06 56.6 169 33.7


User provided reference genes

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