Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 6.2e-118 427.6 227 100.0
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 4.4e-100 368.2 230 85.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.9e-99 365.5 229 85.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.9e-98 362.8 231 84.8
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.4e-84 315.5 233 70.4
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 5.4e-82 308.1 236 66.9
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.5e-79 299.3 229 66.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.7e-78 295.4 229 70.7
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.7e-78 295.4 228 67.5
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.7e-78 295.4 224 69.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 6.2e-78 294.7 231 71.0
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 6.2e-78 294.7 228 66.2
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 8.1e-78 294.3 223 69.1
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 8.1e-78 294.3 227 67.0
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.4e-77 293.5 233 66.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.8e-77 293.1 234 70.5
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.8e-77 293.1 226 65.9
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.4e-77 292.7 231 65.8
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.1e-77 292.4 226 65.5
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.0e-77 292.0 232 63.8
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 4.0e-77 292.0 223 68.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 6.9e-77 291.2 225 68.9
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.0e-77 290.8 231 68.0
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 9.0e-77 290.8 227 69.2
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.5e-76 290.0 231 65.8
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.5e-76 290.0 184 74.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 7.6e-76 287.7 229 68.1
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.0e-75 287.3 229 68.1
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.0e-75 287.3 225 67.6
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.0e-75 287.3 231 68.0
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.0e-75 287.3 232 68.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.3e-75 287.0 229 67.7
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.7e-75 286.6 225 69.3
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.2e-75 286.2 226 68.1
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.8e-75 285.4 233 66.1
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.8e-75 285.4 232 67.2
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.8e-75 285.4 232 65.1
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 4.9e-75 285.0 199 68.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 6.5e-75 284.6 229 62.0
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.1e-74 283.9 228 68.4
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.9e-74 283.1 228 64.9
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.9e-74 283.1 228 64.9
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.5e-74 282.7 223 63.2
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.5e-74 282.7 232 66.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 7.1e-74 281.2 225 64.4
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.2e-73 280.4 230 66.5
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.6e-73 280.0 236 65.3
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.6e-73 280.0 233 61.8
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.6e-73 280.0 225 66.7
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.1e-73 279.6 228 64.0
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.7e-73 279.3 225 65.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.7e-73 279.3 230 67.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.5e-73 278.9 233 69.1
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 4.6e-73 278.5 227 67.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.0e-73 278.1 227 64.3
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.0e-72 277.3 228 68.0
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.0e-72 277.3 225 68.9
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.0e-72 277.3 233 62.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-72 276.9 225 64.9
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.8e-72 276.6 224 66.1
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.8e-72 276.6 224 66.1
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.8e-72 276.6 224 67.9
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.8e-72 276.6 225 66.2
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.0e-72 275.8 223 63.7
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 3.9e-72 275.4 237 65.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.1e-71 273.9 229 66.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.1e-71 273.9 232 65.1
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-71 273.1 224 66.5
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.9e-71 273.1 224 66.5
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.5e-71 272.7 223 66.8
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 2.5e-71 272.7 212 68.9
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.5e-71 272.7 225 66.7
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.3e-71 272.3 225 63.6
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 3.3e-71 272.3 223 67.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.3e-71 272.3 230 62.2
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.3e-71 272.3 230 62.2
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 7.4e-71 271.2 225 63.6
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-71 271.2 224 66.1
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 7.4e-71 271.2 224 66.1
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 9.6e-71 270.8 225 67.6
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 9.6e-71 270.8 223 66.8
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.3e-70 270.4 231 61.0
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.3e-70 270.4 231 66.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.6e-70 270.0 228 66.2
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.6e-70 270.0 229 59.8
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 4.8e-70 268.5 233 66.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 6.2e-70 268.1 225 67.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.1e-69 267.3 229 64.2
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.8e-69 266.5 231 59.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.4e-69 266.2 223 65.0
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.4e-69 266.2 206 68.4
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 3.4e-68 262.3 226 64.2
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 3.4e-68 262.3 207 69.1
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 4.5e-68 261.9 181 72.9
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.0e-67 260.8 216 62.0
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.3e-67 260.4 196 66.8
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.2e-65 253.8 186 70.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 3.5e-65 252.3 193 67.9
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 4.6e-65 251.9 184 71.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.0e-64 250.8 217 65.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.3e-64 250.4 176 73.9
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 5.7e-63 245.0 186 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 5.3e-61 238.4 178 68.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.9e-61 238.0 179 67.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.5e-59 231.1 179 67.0
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.1e-57 226.5 169 68.6
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.1e-53 212.2 138 72.5
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.5e-50 203.0 131 71.0
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 7.2e-42 174.9 183 52.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 9.4e-42 174.5 139 59.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 9.4e-42 174.5 140 56.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-41 174.1 139 59.7
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.6e-41 173.7 139 59.0
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.1e-41 173.3 139 59.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.6e-41 172.6 139 59.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 3.6e-41 172.6 139 59.0
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 8.0e-41 171.4 132 61.4
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-40 171.0 139 58.3
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-40 171.0 139 58.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.0e-40 171.0 139 58.3
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.4e-40 170.6 139 56.1
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.8e-40 170.2 136 58.8
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-40 169.9 139 58.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.3e-40 169.9 139 58.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.0e-40 169.1 139 57.6
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.3e-38 164.1 226 43.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.8e-38 162.9 153 50.3
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.6e-36 157.1 102 75.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 2.9e-35 152.9 103 76.7
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 7.2e-34 148.3 141 49.6
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 3.0e-32 142.9 105 70.5
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.0e-28 130.2 131 59.5
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.0e-27 127.9 226 42.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.3e-27 127.5 191 39.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-27 127.5 150 46.0
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.7e-27 127.1 153 43.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.2e-27 126.7 131 55.7
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.2e-26 122.5 181 39.2
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 9.8e-23 111.3 229 40.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 8.3e-22 108.2 192 35.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-21 107.8 88 55.7
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 3.1e-21 106.3 189 36.0
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.1e-21 106.3 125 47.2
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 4.5e-20 102.4 171 33.9
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.9e-18 97.1 71 60.6
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.5e-18 96.7 100 58.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.0e-17 91.7 59 76.3
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 9.8e-15 84.7 101 45.5
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.8e-13 80.5 108 41.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 5.9e-12 75.5 48 72.9
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.5e-07 58.5 79 40.5
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.5e-07 58.5 79 40.5
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 6.4e-06 55.5 59 45.8


User provided reference genes

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