Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 3.6e-158 561.6 300 100.0
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 5.1e-104 381.7 256 84.0
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 2.5e-103 379.4 255 84.7
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 6.9e-101 371.3 255 83.5
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.7e-75 287.0 260 65.8
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.8e-75 285.8 260 65.0
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 4.2e-74 282.3 252 63.1
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.2e-73 280.8 247 64.0
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 3.6e-73 279.3 253 64.4
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 3.0e-72 276.2 245 62.4
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 8.8e-72 274.6 254 62.2
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.2e-71 274.2 266 61.7
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 3.4e-71 272.7 258 63.2
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.4e-71 272.3 249 61.4
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 5.7e-71 271.9 249 61.8
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.8e-69 266.9 248 62.9
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.1e-69 266.2 257 63.0
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 3.1e-69 266.2 257 62.6
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 4.1e-69 265.8 254 60.6
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 4.1e-69 265.8 257 62.3
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 9.1e-69 264.6 254 62.2
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.6e-68 263.8 253 62.8
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 2.0e-68 263.5 252 60.3
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 2.0e-68 263.5 250 59.6
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 2.7e-68 263.1 235 63.4
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 2.7e-68 263.1 257 59.5
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 3.5e-68 262.7 249 62.2
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 4.5e-68 262.3 254 60.2
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.3e-67 260.8 266 61.3
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.3e-67 260.8 237 65.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.2e-67 260.0 228 65.8
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.9e-67 259.6 248 61.7
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.8e-67 259.2 238 62.6
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 3.8e-67 259.2 245 61.2
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 5.0e-67 258.8 255 59.6
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.1e-66 257.7 233 62.7
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 1.5e-66 257.3 313 53.0
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 3.2e-66 256.1 244 61.9
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 3.2e-66 256.1 243 65.0
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 4.2e-66 255.8 228 65.4
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 7.2e-66 255.0 253 58.9
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.6e-65 253.8 253 58.9
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 3.6e-65 252.7 225 64.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.6e-65 252.7 233 63.1
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.6e-65 252.7 253 58.1
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.3e-64 250.0 286 54.9
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.0e-64 249.6 232 63.4
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 8.8e-64 248.1 251 57.0
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 2.0e-63 246.9 269 56.1
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 2.0e-63 246.9 262 59.5
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 3.4e-63 246.1 269 56.1
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 3.4e-63 246.1 251 57.0
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 9.8e-63 244.6 319 51.7
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 4.9e-62 242.3 231 60.6
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 9.2e-61 238.0 249 58.2
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.2e-60 237.7 227 58.1
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.2e-60 237.7 222 63.5
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.7e-60 236.5 234 61.1
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 2.7e-60 236.5 231 63.6
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 2.3e-59 233.4 248 56.0
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 5.0e-59 232.3 224 62.5
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 1.1e-58 231.1 253 57.3
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.5e-58 230.7 248 55.2
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 3.3e-58 229.6 234 57.7
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 4.3e-58 229.2 235 56.6
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 4.3e-58 229.2 244 56.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 4.3e-58 229.2 233 57.5
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 5.6e-58 228.8 214 61.7
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 5.6e-58 228.8 241 55.6
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 7.3e-58 228.4 254 54.3
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 9.5e-58 228.0 243 57.2
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 9.5e-58 228.0 243 57.2
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 9.5e-58 228.0 232 59.9
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.2e-57 227.6 240 56.7
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.2e-57 227.6 240 56.7
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.1e-57 226.9 231 57.6
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 3.6e-57 226.1 230 57.8
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 4.7e-57 225.7 233 55.8
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.0e-56 224.6 239 56.1
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.4e-56 224.2 243 56.8
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.4e-56 224.2 197 67.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 3.0e-56 223.0 234 56.4
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 4.0e-56 222.6 240 55.8
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 4.0e-56 222.6 234 58.5
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 5.2e-56 222.2 243 55.1
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 5.2e-56 222.2 240 55.4
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 5.2e-56 222.2 214 60.7
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.2e-55 221.1 240 55.4
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.2e-55 221.1 266 53.4
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 5.7e-55 218.8 243 56.4
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.3e-54 217.6 244 53.3
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.7e-54 217.2 243 56.0
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 2.2e-54 216.9 226 56.2
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 2.2e-54 216.9 249 53.0
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 3.7e-54 216.1 243 55.6
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 3.7e-54 216.1 237 54.9
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 3.7e-54 216.1 234 54.7
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 1.1e-53 214.5 231 53.7
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.8e-53 213.8 245 53.5
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 3.2e-53 213.0 235 56.6
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 3.5e-52 209.5 232 53.9
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.0e-51 208.0 226 55.3
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 2.3e-51 206.8 242 53.3
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 3.9e-51 206.1 173 71.1
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 2.6e-47 193.4 248 49.2
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.3e-46 191.0 232 52.6
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.1e-45 188.0 250 49.2
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-45 187.6 235 50.6
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.4e-45 187.6 250 49.6
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 1.2e-44 184.5 232 51.3
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 6.8e-40 168.7 123 72.4
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 5.8e-39 165.6 243 45.3
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.5e-31 141.0 164 54.3
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 3.4e-31 139.8 281 38.1
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 3.8e-30 136.3 124 64.5
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 8.6e-27 125.2 126 56.3
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 1.6e-25 120.9 169 45.0
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 8.1e-25 118.6 122 52.5
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.1e-24 118.2 245 35.5
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 7.6e-23 112.1 233 40.3
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.9e-19 99.8 221 36.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 6.4e-14 82.4 225 33.3
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.2e-12 78.2 210 35.2
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 1.1e-10 71.6 74 56.8
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.8e-09 66.2 97 42.3
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 9.9e-07 58.5 236 28.8


User provided reference genes

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