Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.9e-186 655.2 357 100.0
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 5.8e-155 551.2 357 85.7
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 6.2e-149 531.2 357 81.5
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 8.1e-149 530.8 358 81.8
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.2e-128 463.8 363 76.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.2e-94 350.9 370 61.4
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 5.5e-89 332.0 372 60.8
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 8.3e-85 318.2 371 58.8
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 8.3e-85 318.2 365 56.4
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 5.9e-83 312.0 365 58.4
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.8e-82 309.3 365 55.6
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.5e-81 306.6 365 56.7
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.1e-80 303.5 354 55.4
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 3.6e-80 302.8 362 55.8
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 2.3e-79 300.1 369 56.6
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.0e-78 297.0 358 56.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 4.9e-77 292.4 368 56.5
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 6.4e-77 292.0 368 57.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.4e-76 290.8 374 53.2
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 3.2e-76 289.7 306 62.7
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.1e-76 289.3 359 57.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.4e-76 288.9 365 54.0
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.9e-75 285.4 355 56.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.9e-75 285.4 360 54.7
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.8e-75 285.0 363 53.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.0e-74 283.1 363 52.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.1e-73 281.2 330 58.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.1e-73 281.2 360 52.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.3e-73 279.6 366 54.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 4.3e-73 279.3 362 54.7
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 8.0e-72 275.0 355 54.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.0e-71 274.6 363 52.6
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.8e-71 273.9 363 52.9
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.1e-71 273.1 368 53.0
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.1e-71 273.1 344 53.2
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 5.2e-71 272.3 340 55.0
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.5e-70 270.8 364 52.7
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.0e-70 270.4 358 52.5
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 3.4e-70 269.6 360 51.4
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.4e-70 269.6 374 52.1
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.4e-70 269.2 341 56.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.9e-69 266.5 373 52.0
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.9e-68 263.8 365 52.6
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.0e-67 258.8 393 50.6
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 7.8e-67 258.5 292 59.6
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.6e-66 255.4 363 49.9
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.6e-66 255.0 365 50.4
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.9e-65 253.8 359 48.2
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.5e-65 253.4 365 50.4
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 3.3e-65 253.1 377 50.1
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 5.6e-65 252.3 351 51.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.6e-65 252.3 355 47.9
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.1e-64 250.4 366 52.2
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.1e-64 250.4 375 49.3
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.3e-63 246.9 354 52.0
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.1e-63 246.5 367 52.3
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 5.2e-63 245.7 361 50.7
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 8.9e-63 245.0 281 57.7
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.5e-62 244.2 364 50.0
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.5e-62 244.2 351 51.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.5e-62 244.2 365 51.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-62 244.2 353 50.7
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 4.4e-62 242.7 377 48.8
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 7.5e-62 241.9 307 53.4
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.3e-61 241.1 360 48.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.4e-60 237.7 364 48.9
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.4e-60 237.7 335 52.8
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.4e-60 237.7 366 47.5
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.4e-60 236.9 363 48.8
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.4e-60 236.9 377 47.7
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.4e-60 236.9 402 48.3
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 9.2e-60 235.0 361 50.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.2e-60 235.0 365 46.6
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.7e-59 233.4 333 51.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.5e-59 233.0 367 47.4
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 4.6e-59 232.6 362 50.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.0e-59 232.3 366 50.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 6.0e-59 232.3 373 46.6
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.0e-58 231.5 342 48.5
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.7e-58 230.7 370 50.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 5.1e-58 229.2 239 61.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 5.1e-58 229.2 360 46.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 5.1e-58 229.2 371 48.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 6.6e-58 228.8 335 51.6
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.3e-57 226.5 399 46.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 7.3e-57 225.3 345 48.7
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.2e-56 224.6 352 48.3
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.6e-56 223.0 369 45.5
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 8.1e-56 221.9 351 47.3
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.1e-55 221.5 366 45.4
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.4e-55 221.1 401 47.1
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.4e-55 221.1 366 46.4
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.8e-55 220.7 355 45.6
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 5.2e-55 219.2 322 46.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 8.9e-55 218.4 329 47.7
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.2e-54 218.0 369 44.7
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.5e-54 217.6 333 48.3
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 3.4e-54 216.5 361 46.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.9e-53 213.4 362 44.2
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 8.4e-53 211.8 368 45.7
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.1e-52 211.5 365 47.7
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.9e-52 210.7 371 46.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 9.2e-52 208.4 370 46.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 6.6e-50 202.2 250 54.4
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.9e-49 200.7 353 45.9
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.4e-47 194.5 310 46.8
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.8e-47 194.1 315 48.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 2.0e-46 190.7 346 43.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-46 190.3 390 41.8
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 4.2e-44 183.0 353 44.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.5e-43 179.9 335 43.9
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.0e-43 179.1 359 42.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 8.7e-42 175.3 372 39.8
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 7.3e-41 172.2 334 40.4
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 1.3e-40 171.4 389 37.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.1e-40 170.6 330 41.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.6e-40 169.9 250 48.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 9.0e-39 165.2 354 41.0
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.3e-37 161.4 364 39.8
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.7e-37 161.0 328 39.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.9e-37 160.2 352 40.1
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 3.2e-36 156.8 337 40.1
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 4.6e-35 152.9 360 39.7
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.0e-34 151.8 361 37.7
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 3.9e-34 149.8 372 37.4
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 6.7e-34 149.1 362 39.0
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.9e-33 147.5 340 38.8
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 2.1e-32 144.1 361 36.0
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 3.1e-31 140.2 364 38.2
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 3.1e-31 140.2 364 38.2
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 3.1e-31 140.2 364 38.2
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 6.2e-24 115.9 181 48.1
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.8e-16 90.5 433 28.9
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.3e-09 67.0 89 40.4
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 5.7e-09 66.2 97 40.2
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 7.4e-09 65.9 143 32.9
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.3e-08 65.1 158 29.1
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 2.2e-08 64.3 206 31.1
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 2.8e-08 63.9 94 38.3
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 3.7e-08 63.5 79 43.0
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 3.7e-08 63.5 106 38.7
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 6.3e-08 62.8 132 33.3
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 8.2e-08 62.4 146 32.2
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-07 62.0 149 29.5
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.1e-07 62.0 84 36.9
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.1e-07 62.0 116 35.3
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.1e-07 62.0 164 31.7
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.4e-07 61.6 185 29.2
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 2.4e-07 60.8 230 27.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 2.4e-07 60.8 204 31.4
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.4e-07 60.8 253 26.9
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 5.3e-07 59.7 139 30.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.9e-07 59.3 137 31.4
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 9.1e-07 58.9 207 28.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 9.1e-07 58.9 214 25.7
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 9.1e-07 58.9 126 30.2
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 1.2e-06 58.5 36 77.8
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.2e-06 58.5 164 29.9
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.2e-06 58.5 59 45.8
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.5e-06 58.2 238 29.8
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.0e-06 57.8 82 36.6
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 2.0e-06 57.8 245 29.4
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 2.0e-06 57.8 202 31.7
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 2.6e-06 57.4 68 42.6
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 4.5e-06 56.6 258 25.6
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 4.5e-06 56.6 199 30.7
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.5e-06 56.6 243 27.2
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 7.7e-06 55.8 201 28.9


User provided reference genes

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