Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 0.0e+00 1081.2 571 100.0
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 4.9e-289 997.3 530 91.7
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 7.1e-288 993.4 569 87.2
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 7.1e-264 913.7 528 82.4
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 2.7e-263 911.8 528 82.8
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 2.7e-263 911.8 530 83.0
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.3e-261 904.8 569 77.0
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.3e-260 902.9 529 81.3
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 1.6e-260 902.5 529 82.2
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 6.2e-260 900.6 530 82.5
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.8e-259 899.0 569 77.5
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 2.4e-259 898.7 528 81.4
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 3.1e-259 898.3 530 80.9
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 6.9e-259 897.1 530 81.1
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.2e-258 896.3 528 81.4
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 2.0e-258 895.6 529 81.9
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 3.4e-258 894.8 531 80.8
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 5.8e-258 894.0 528 80.5
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 1.3e-257 892.9 531 80.6
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.3e-257 892.9 528 80.5
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.9e-257 891.7 569 76.8
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 6.5e-257 890.6 569 76.8
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.5e-257 890.6 530 79.6
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 1.1e-256 889.8 529 80.0
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 3.2e-256 888.3 530 79.2
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 5.5e-256 887.5 531 81.0
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 7.1e-256 887.1 526 80.6
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.6e-255 885.9 529 80.7
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 2.1e-255 885.6 530 80.2
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.7e-255 885.2 530 80.2
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 7.9e-255 883.6 531 80.6
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.3e-254 882.9 529 79.4
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.8e-254 882.5 528 79.5
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 3.0e-254 881.7 528 81.1
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 3.0e-254 881.7 529 80.5
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 5.1e-254 880.9 529 80.9
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 1.9e-253 879.0 531 79.5
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 3.3e-253 878.2 529 80.3
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 4.3e-253 877.9 533 79.4
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 1.3e-252 876.3 529 78.8
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.8e-252 875.2 533 79.2
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.8e-252 874.4 577 75.2
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 5.3e-251 870.9 530 78.3
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 6.9e-251 870.5 554 75.8
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.2e-250 869.8 531 77.8
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 7.7e-250 867.1 528 79.7
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 7.7e-250 867.1 529 77.5
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 1.3e-249 866.3 512 82.0
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 1.1e-248 863.2 529 78.1
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 3.0e-246 855.1 533 77.7
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 5.1e-246 854.4 531 75.7
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 8.8e-246 853.6 530 76.2
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 8.8e-246 853.6 529 77.1
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 8.8e-246 853.6 581 72.3
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 3.3e-245 851.7 531 77.2
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 5.7e-245 850.9 531 77.0
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 7.4e-245 850.5 535 76.6
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 9.7e-245 850.1 531 77.0
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 1.7e-244 849.4 594 69.9
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.2e-244 849.0 512 78.5
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 4.8e-244 847.8 533 77.1
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 3.4e-242 841.6 528 76.3
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.0e-241 840.1 528 75.8
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 1.3e-241 839.7 531 75.1
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.7e-241 839.3 528 75.9
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 2.9e-241 838.6 530 75.1
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 3.8e-241 838.2 531 75.5
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 5.0e-241 837.8 531 76.1
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 1.1e-240 836.6 531 75.1
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.4e-240 836.3 531 75.7
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.4e-240 836.3 530 77.5
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 9.4e-240 833.6 545 74.1
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 9.4e-240 833.6 531 75.0
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 9.4e-240 833.6 531 75.0
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 1.2e-239 833.2 531 75.3
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 1.2e-239 833.2 531 75.3
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 2.1e-239 832.4 531 74.8
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 3.6e-239 831.6 530 74.3
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 4.7e-239 831.2 531 74.6
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 6.1e-239 830.9 518 76.1
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.0e-238 830.1 531 74.4
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.4e-238 829.7 531 74.6
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 2.3e-238 828.9 528 74.8
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 3.0e-238 828.6 528 75.8
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 3.0e-238 828.6 487 81.9
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.9e-238 828.2 529 74.9
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 7.4e-237 823.9 528 74.4
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 9.7e-237 823.5 528 75.0
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.3e-236 823.2 528 75.0
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 1.7e-236 822.8 530 73.2
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 2.2e-236 822.4 532 73.1
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 7.0e-235 817.4 517 76.8
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 3.5e-234 815.1 529 75.0
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 2.0e-229 799.3 479 81.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 7.4e-229 797.3 531 71.8
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 1.1e-227 793.5 432 91.0
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 3.8e-225 785.0 531 71.4
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 1.5e-224 783.1 529 70.3
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 8.0e-223 777.3 521 73.3
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 4.1e-211 738.4 456 77.0
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 2.9e-209 732.3 446 79.8
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 1.2e-207 726.9 578 63.3
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 6.1e-207 724.5 528 68.8
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 3.4e-197 692.2 434 77.0
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.8e-194 681.0 406 79.6
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 6.2e-191 671.4 439 74.7
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 5.8e-181 638.3 390 81.3
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.3e-177 627.1 538 57.8
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 6.2e-175 618.2 404 76.2
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 3.2e-171 605.9 389 76.3
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.6e-159 567.0 395 72.4
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 3.0e-153 546.2 532 53.8
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 8.1e-151 538.1 545 51.7
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 4.9e-148 528.9 523 52.8
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 6.9e-142 508.4 330 76.7
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 3.9e-121 439.5 581 42.2
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.0e-116 424.9 339 63.7
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-94 350.1 222 72.5
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 9.8e-88 328.6 213 77.5
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 1.0e-81 308.5 223 63.7
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.3e-81 307.4 218 72.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.0e-80 304.3 237 66.2
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.8e-74 283.9 541 36.6
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 1.5e-72 278.1 553 34.4
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.4e-62 245.0 553 32.7
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 6.2e-58 229.6 509 33.2
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.9e-55 220.7 148 77.0
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.2e-54 216.9 151 73.5
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.5e-51 207.6 139 77.0
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.8e-50 204.1 126 74.6
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 4.3e-43 180.3 95 82.1
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 4.8e-42 176.8 191 57.6
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.4e-38 165.2 138 63.8
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 2.5e-19 101.3 72 65.3
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.8e-18 97.1 49 83.7
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 9.1e-17 92.8 64 64.1
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.6e-16 91.3 50 78.0
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 4.6e-13 80.5 49 73.5
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.3e-10 72.4 59 66.1
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 7.7e-08 63.2 328 27.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.7e-07 62.0 327 26.9
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 5.0e-07 60.5 325 26.8
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 8.5e-07 59.7 301 26.9
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 1.4e-06 58.9 302 27.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 2.5e-06 58.2 300 26.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 3.2e-06 57.8 306 26.5


User provided reference genes

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