Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009847 Sechium edule HOM05D003065 ORTHO05D003802 1.9e-72 275.8 142 100.0
MELO3C019237.2 Cucumis melo HOM05D003065 ORTHO05D003802 9.1e-19 97.4 145 46.9
ClCG02G008460 Citrullus lanatus HOM05D003065 ORTHO05D003802 1.2e-18 97.1 142 42.3
Sed0000552 Sechium edule HOM05D003065 ORTHO05D003802 4.5e-18 95.1 142 46.5
CsaV3_2G035170 Cucumis sativus L. HOM05D003065 ORTHO05D003802 1.3e-17 93.6 145 45.5
PGR142G3240 Punica granatum HOM05D003065 ORTHO05D003802 1.5e-13 80.1 142 38.0
Atru.chr6.3154 Acer truncatum HOM05D003065 ORTHO05D003802 4.4e-13 78.6 143 41.3
Cpa.g.sc8.233 Carica papaya HOM05D003065 ORTHO05D003802 9.8e-13 77.4 143 38.5
Lalb_Chr01g0005571 Lupinus albus HOM05D003065 ORTHO05D003802 1.3e-12 77.0 143 36.4
Lalb_Chr03g0028881 Lupinus albus HOM05D003065 ORTHO05D003802 1.7e-12 76.6 143 37.1
PGSC0003DMG400024333 Solanum tuberosum HOM05D003065 ORTHO05D003802 2.8e-12 75.9 143 36.4
Solyc12g005780.3 Solanum lycopersicum HOM05D003065 ORTHO05D003802 3.7e-12 75.5 143 36.4
Sopen12g001710 Solanum pennellii HOM05D003065 ORTHO05D003802 3.7e-12 75.5 143 36.4
Manes.13G072700 Manihot esculenta HOM05D003065 ORTHO05D003802 4.9e-12 75.1 143 35.7
Gohir.D13G062500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 6.3e-12 74.7 143 37.8
Gorai.013G071000 Gossypium raimondii HOM05D003065 ORTHO05D003802 6.3e-12 74.7 143 37.8
AL1G15050 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 8.3e-12 74.3 143 38.5
Sabra07G0098600 Salix brachista HOM05D003065 ORTHO05D003802 8.3e-12 74.3 143 37.8
Carub.0001s0456 Capsella rubella HOM05D003065 ORTHO05D003802 1.1e-11 73.9 143 39.2
Thecc.02G162000 Theobroma cacao HOM05D003065 ORTHO05D003802 1.1e-11 73.9 143 37.1
Glyma.12G101300 Glycine max HOM05D003065 ORTHO05D003802 1.4e-11 73.6 143 36.4
AT1G05270 Arabidopsis thaliana HOM05D003065 ORTHO05D003802 1.8e-11 73.2 143 39.2
CiPaw.04G117500 Carya illinoinensis HOM05D003065 ORTHO05D003802 1.8e-11 73.2 143 37.1
QL08p033752 Quercus lobata HOM05D003065 ORTHO05D003802 1.8e-11 73.2 141 36.9
GSVIVG01030621001 Vitis vinifera HOM05D003065 ORTHO05D003802 1.8e-11 73.2 143 37.1
Ca_19100_v3 Cicer arietinum L. HOM05D003065 ORTHO05D003802 2.4e-11 72.8 143 35.0
Lj3g0014705 Lotus japonicus HOM05D003065 ORTHO05D003802 2.4e-11 72.8 143 35.0
Phvul.011G106000 Phaseolus vulgaris HOM05D003065 ORTHO05D003802 3.1e-11 72.4 143 34.3
Dinv18529 Davidia involucrata HOM05D003065 ORTHO05D003802 4.1e-11 72.0 143 36.4
Medtr4g046707 Medicago truncatula HOM05D003065 ORTHO05D003802 4.1e-11 72.0 143 34.3
SalBow1G7597 Salvia bowleyana HOM05D003065 ORTHO05D003802 4.1e-11 72.0 142 34.5
Gohir.A13G059500 Gossypium hirsutum HOM05D003065 ORTHO05D003802 5.4e-11 71.6 143 37.1
VMungo1127G1760 Vigna mungo HOM05D003065 ORTHO05D003802 5.4e-11 71.6 143 35.0
Cfa014437 Carpinus fangiana HOM05D003065 ORTHO05D003802 7.0e-11 71.2 142 36.6
Haze_12895 Corylus avellana HOM05D003065 ORTHO05D003802 7.0e-11 71.2 142 36.6
Potri.007G121900 Populus trichocarpa HOM05D003065 ORTHO05D003802 7.0e-11 71.2 143 39.9
THA.LOC104827382 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 7.0e-11 71.2 143 37.8
CARHR004740 Cardamine hirsuta HOM05D003065 ORTHO05D003802 9.2e-11 70.9 143 37.8
Ciclev10015457m.g Citrus clementina HOM05D003065 ORTHO05D003802 9.2e-11 70.9 143 34.3
COL.COLO4_12981 Corchorus olitorius HOM05D003065 ORTHO05D003802 9.2e-11 70.9 143 35.0
Thhalv10007929m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 9.2e-11 70.9 143 37.1
Potri.017G038500 Populus trichocarpa HOM05D003065 ORTHO05D003802 1.2e-10 70.5 143 39.9
Duzib248G1274 Durio zibethinus HOM05D003065 ORTHO05D003802 1.6e-10 70.1 143 38.5
Nitab4.5_0000631g0050 Nicotiana tabacum HOM05D003065 ORTHO05D003802 2.0e-10 69.7 143 33.6
RcHm_v2.0_Chr2g0160041 Rosa chinensis HOM05D003065 ORTHO05D003802 2.0e-10 69.7 143 37.1
CAN.G80.21 Capsicum annuum HOM05D003065 ORTHO05D003802 2.7e-10 69.3 143 35.7
Cc05_g05030 Coffea canephora HOM05D003065 ORTHO05D003802 2.7e-10 69.3 143 35.0
Nn1g07002 Nelumbo nucifera HOM05D003065 ORTHO05D003802 2.7e-10 69.3 141 34.8
unitig_21.g20057 Utricularia gibba HOM05D003065 ORTHO05D003802 2.7e-10 69.3 142 35.2
BcaC07g36852 Brassica carinata HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 36.4
A08p36480 Brassica napus HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 36.4
C08p01860 Brassica napus HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 36.4
BolC8t46984H Brassica oleracea HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 36.4
BraA08t35551Z Brassica rapa HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 36.4
Prupe.3G220000 Prunus persica HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 34.3
THA.LOC104800983 Tarenaya hassleriana HOM05D003065 ORTHO05D003802 3.5e-10 68.9 143 37.1
Glyma.U031313 Glycine max HOM05D003065 ORTHO05D003802 5.9e-10 68.2 143 34.3
Hma1.2p1_0613F.1_g189150 Hydrangea macrophylla HOM05D003065 ORTHO05D003802 7.8e-10 67.8 141 34.0
FvH4_6g43520 Fragaria vesca HOM05D003065 ORTHO05D003802 1.0e-09 67.4 143 35.7
FAN14G1636 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.3e-09 67.0 143 35.7
HanXRQChr17g0560931 Helianthus annuus HOM05D003065 ORTHO05D003802 1.3e-09 67.0 143 32.9
Sp1g04125 Schrenkiella parvula HOM05D003065 ORTHO05D003802 1.3e-09 67.0 143 35.0
SpUn0024_0010 Schrenkiella parvula HOM05D003065 ORTHO05D003802 1.3e-09 67.0 143 35.0
FAN02G0663 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.7e-09 66.6 143 35.7
FAN09G1506 Fragaria x ananassa HOM05D003065 ORTHO05D003802 1.7e-09 66.6 143 35.7
TWI36G1576 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 1.7e-09 66.6 143 35.7
arahy.Tifrunner.gnm1.ann1.Y3QZTF Arachis hypogaea HOM05D003065 ORTHO05D003802 2.3e-09 66.2 143 35.7
MSTRG.12287 Avicennia marina HOM05D003065 ORTHO05D003802 2.3e-09 66.2 141 31.9
BcaC07g42139 Brassica carinata HOM05D003065 ORTHO05D003802 2.3e-09 66.2 143 35.0
CiPaw.03G162600 Carya illinoinensis HOM05D003065 ORTHO05D003802 2.3e-09 66.2 142 38.7
Sabra17G0025600 Salix brachista HOM05D003065 ORTHO05D003802 2.3e-09 66.2 143 35.0
Sc12g0002370 Simmondsia chinensis HOM05D003065 ORTHO05D003802 2.3e-09 66.2 142 33.8
CAN.G921.9 Capsicum annuum HOM05D003065 ORTHO05D003802 2.9e-09 65.9 143 33.6
TWI75G1157 Tripterygium wilfordii HOM05D003065 ORTHO05D003802 2.9e-09 65.9 143 34.3
vmacro09325 Vaccinium macrocarpon HOM05D003065 ORTHO05D003802 2.9e-09 65.9 142 36.6
MSTRG.14153 Avicennia marina HOM05D003065 ORTHO05D003802 3.8e-09 65.5 143 33.6
FAN09G0800 Fragaria x ananassa HOM05D003065 ORTHO05D003802 3.8e-09 65.5 142 33.8
MBI02_g34314_MAGBIO Magnolia biondii HOM05D003065 ORTHO05D003802 3.8e-09 65.5 142 34.5
Nn1g03660 Nelumbo nucifera HOM05D003065 ORTHO05D003802 3.8e-09 65.5 143 34.3
DCAR_012955 Daucus carota HOM05D003065 ORTHO05D003802 5.0e-09 65.1 143 32.9
ECA233G0914 Erigeron canadensis HOM05D003065 ORTHO05D003802 5.0e-09 65.1 143 32.9
CANSAT64G1715 Cannabis sativa HOM05D003065 ORTHO05D003802 6.6e-09 64.7 143 32.9
Nitab4.5_0005894g0020 Nicotiana tabacum HOM05D003065 ORTHO05D003802 6.6e-09 64.7 143 35.0
BolC8t52711H Brassica oleracea HOM05D003065 ORTHO05D003802 8.6e-09 64.3 143 34.3
BraA09t42082Z Brassica rapa HOM05D003065 ORTHO05D003802 8.6e-09 64.3 142 33.8
Migut.H01221 Erythranthe guttata HOM05D003065 ORTHO05D003802 8.6e-09 64.3 143 32.9
Nitab4.5_0001176g0140 Nicotiana tabacum HOM05D003065 ORTHO05D003802 8.6e-09 64.3 143 35.0
C08p51790 Brassica napus HOM05D000310 ORTHO05D003802 1.1e-08 63.9 142 33.8
Thhalv10017846m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 1.1e-08 63.9 143 34.3
MD09G1105400 Malus domestica HOM05D003065 ORTHO05D003802 1.5e-08 63.5 142 36.6
Ah.01g014620 Amaranthus hybridus HOM05D003065 ORTHO05D003802 1.9e-08 63.2 142 31.7
BcaC02g11329 Brassica carinata HOM05D003065 ORTHO05D003802 1.9e-08 63.2 141 36.2
C04p17290 Brassica napus HOM05D003065 ORTHO05D003802 1.9e-08 63.2 141 36.2
BolC4t23281H Brassica oleracea HOM05D003065 ORTHO05D003802 1.9e-08 63.2 141 36.2
Aqoxy4G02067 Aquilegia oxysepala HOM05D003065 ORTHO05D003802 2.5e-08 62.8 143 36.4
TPR.G19036 Trifolium pratense HOM05D003065 ORTHO05D003802 2.5e-08 62.8 143 31.5
AUR62037144 Chenopodium quinoa HOM05D003065 ORTHO05D003802 3.3e-08 62.4 141 34.8
A05p13140 Brassica napus HOM05D003065 ORTHO05D003802 5.6e-08 61.6 143 36.4
BraA05t20252Z Brassica rapa HOM05D003065 ORTHO05D003802 5.6e-08 61.6 143 36.4
CSS0049428 Camellia sinensis var. sinensis HOM05D003065 ORTHO05D003802 5.6e-08 61.6 142 33.1
AUR62025067 Chenopodium quinoa HOM05D003065 ORTHO05D003802 7.3e-08 61.2 144 33.3
MD17G1093000 Malus domestica HOM05D003065 ORTHO05D003802 7.3e-08 61.2 142 35.2
Aa31LG1G19430 Aethionema arabicum HOM05D003065 ORTHO05D003802 9.5e-08 60.8 143 32.9
Thhalv10017883m.g Eutrema salsugineum HOM05D003065 ORTHO05D003802 1.2e-07 60.5 143 32.9
BcaB02g10475 Brassica carinata HOM05D003065 ORTHO05D003802 3.6e-07 58.9 141 36.2
CARHR126160 Cardamine hirsuta HOM05D003065 ORTHO05D003802 6.1e-07 58.2 139 33.8
Lsat_1_v5_gn_8_129420 Lactuca sativa HOM05D003065 ORTHO05D003802 8.0e-07 57.8 133 31.6
Peaxi162Scf00007g01221 Petunia axillaris HOM05D003065 ORTHO05D003802 1.0e-06 57.4 143 31.5
AL4G27732 Arabidopsis lyrata HOM05D003065 ORTHO05D003802 2.3e-06 56.2 139 34.5
EL10Ac9g20661 Beta vulgaris HOM05D003065 ORTHO05D003802 4.0e-06 55.5 142 31.7
Sp4g14710 Schrenkiella parvula HOM05D003065 ORTHO05D003802 4.0e-06 55.5 141 31.2
Zm00001eb291870 Zea mays HOM05D003065 ORTHO05D003802 4.0e-06 55.5 143 32.9
BcaB01g03983 Brassica carinata HOM05D003065 ORTHO05D003802 5.2e-06 55.1 143 31.5
BcaC01g05909 Brassica carinata HOM05D003065 ORTHO05D003802 5.2e-06 55.1 143 31.5
C03p21170 Brassica napus HOM05D003065 ORTHO05D003802 5.2e-06 55.1 143 31.5
Carub.0004s1369 Capsella rubella HOM05D003065 ORTHO05D003802 8.9e-06 54.3 137 35.8
Os05g0499500 Oryza sativa ssp. japonica HOM05D003065 ORTHO05D003802 8.9e-06 54.3 143 31.5


User provided reference genes

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