Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 5.1e-122 441.0 217 100.0
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 8.6e-61 237.7 199 64.3
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 6.2e-35 151.8 222 41.9
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.1e-34 151.0 222 42.3
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 5.3e-34 148.7 222 42.3
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.2e-33 147.5 224 41.5
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 6.0e-30 135.2 212 40.6
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 3.4e-25 119.4 207 39.6
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.1e-22 110.2 213 34.7
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 6.1e-22 108.6 212 37.3
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.0e-21 107.8 225 35.1
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 2.3e-21 106.7 221 34.4
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.3e-21 106.7 219 34.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 5.1e-21 105.5 218 36.2
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 5.1e-21 105.5 223 33.2
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.7e-21 105.1 223 32.7
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.7e-21 105.1 223 32.7
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.7e-21 105.1 223 32.7
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.1e-20 104.4 219 34.7
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.1e-20 104.4 212 34.0
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.9e-20 103.6 223 31.8
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.9e-20 103.6 214 35.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.5e-20 103.2 208 34.1
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 2.5e-20 103.2 211 34.1
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 4.3e-20 102.4 223 35.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 9.7e-20 101.3 224 32.6
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 1.3e-19 100.9 211 33.2
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 1.6e-19 100.5 221 32.6
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 1.6e-19 100.5 229 31.0
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 4.8e-19 99.0 145 43.4
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 6.3e-19 98.6 222 36.0
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.3e-19 98.6 224 32.1
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.1e-18 97.8 212 34.0
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 1.1e-18 97.8 216 33.8
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.8e-18 97.1 224 32.1
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 1.8e-18 97.1 245 29.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.8e-18 97.1 219 33.8
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.4e-18 96.7 211 34.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 4.1e-18 95.9 222 34.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 4.1e-18 95.9 154 37.7
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-18 95.9 226 31.9
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 4.1e-18 95.9 228 32.0
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.3e-18 95.5 212 33.0
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.3e-18 95.5 208 33.2
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 6.9e-18 95.1 183 36.1
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 9.1e-18 94.7 212 33.0
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.1e-18 94.7 220 32.3
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 9.1e-18 94.7 217 32.3
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 1.2e-17 94.4 209 33.5
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 1.5e-17 94.0 212 33.5
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 2.0e-17 93.6 223 32.3
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 2.0e-17 93.6 220 32.7
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 2.6e-17 93.2 182 34.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 3.4e-17 92.8 213 32.4
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 3.4e-17 92.8 219 32.4
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 3.4e-17 92.8 220 31.4
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.5e-17 92.4 215 32.1
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 4.5e-17 92.4 208 32.7
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 5.9e-17 92.0 216 31.9
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 5.9e-17 92.0 196 35.2
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.0e-16 91.3 135 40.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.0e-16 91.3 161 37.3
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 1.3e-16 90.9 226 33.2
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.3e-16 90.9 216 31.9
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.7e-16 90.5 214 31.3
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 2.2e-16 90.1 213 30.5
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.9e-16 89.7 216 32.4
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 2.9e-16 89.7 214 30.4
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 2.9e-16 89.7 212 32.5
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.9e-16 89.7 220 30.9
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 3.8e-16 89.4 217 30.9
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 6.5e-16 88.6 189 32.3
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 8.5e-16 88.2 195 33.3
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 8.5e-16 88.2 189 31.7
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 8.5e-16 88.2 189 31.7
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 8.5e-16 88.2 156 35.9
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.1e-15 87.8 189 31.7
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 1.1e-15 87.8 217 31.8
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.1e-15 87.8 159 36.5
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.1e-15 87.8 227 30.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.4e-15 87.4 156 35.9
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.5e-15 86.7 213 31.0
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.2e-15 86.3 190 32.6
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 3.2e-15 86.3 228 32.0
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 4.2e-15 85.9 198 33.3
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 4.2e-15 85.9 219 30.6
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 7.2e-15 85.1 161 33.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 7.2e-15 85.1 200 30.5
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 9.4e-15 84.7 213 29.6
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.2e-14 84.3 189 33.3
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.2e-14 84.3 190 32.1
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.6e-14 84.0 189 31.7
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.6e-14 84.0 219 32.4
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 2.1e-14 83.6 190 32.1
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.1e-14 83.6 228 32.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.7e-14 83.2 189 32.8
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 2.7e-14 83.2 202 31.2
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 3.6e-14 82.8 189 31.2
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.6e-14 82.4 189 32.3
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 6.1e-14 82.0 209 29.2
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 7.9e-14 81.6 189 31.2
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.0e-13 81.3 161 34.2
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.4e-13 80.9 190 33.2
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.4e-13 80.9 166 31.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 2.3e-13 80.1 83 51.8
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.3e-13 80.1 136 38.2
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 5.1e-13 79.0 223 30.9
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 6.7e-13 78.6 188 31.9
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 8.8e-13 78.2 188 30.3
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.1e-12 77.8 150 34.0
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 2.0e-12 77.0 187 33.2
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 2.6e-12 76.6 217 30.4
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 3.3e-12 76.3 188 31.9
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.3e-12 76.3 205 29.8
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.3e-12 76.3 198 30.3
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 5.7e-12 75.5 115 40.0
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 7.4e-12 75.1 177 31.1
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 7.4e-12 75.1 198 33.3
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 9.7e-12 74.7 141 36.2
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-11 74.3 185 32.4
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.3e-11 74.3 83 47.0
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.3e-11 74.3 94 43.6
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-11 74.3 119 38.7
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.7e-11 73.9 153 32.7
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.7e-11 73.9 216 27.8
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.7e-11 73.9 141 36.2
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 3.7e-11 72.8 221 27.1
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 6.3e-11 72.0 83 45.8
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 6.3e-11 72.0 215 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 8.2e-11 71.6 81 44.4
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 1.1e-10 71.2 174 30.5
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.1e-10 71.2 143 32.9
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-10 71.2 143 32.9
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 1.4e-10 70.9 85 43.5
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 2.4e-10 70.1 189 29.1
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 4.1e-10 69.3 191 30.4
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-10 69.3 83 43.4
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.3e-10 68.9 78 44.9
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 5.3e-10 68.9 81 45.7
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 9.1e-10 68.2 199 30.2
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 9.1e-10 68.2 148 33.1
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.5e-09 67.4 179 33.0
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.5e-09 67.4 178 32.6
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.5e-09 67.4 197 29.4
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 2.0e-09 67.0 83 42.2
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.0e-09 67.0 83 42.2
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 3.4e-09 66.2 82 41.5
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 4.5e-09 65.9 152 27.6
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 4.5e-09 65.9 108 35.2
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 7.7e-09 65.1 190 28.4
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.3e-08 64.3 80 41.2
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.2e-08 63.5 106 33.0
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 2.9e-08 63.2 63 46.0
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 3.8e-08 62.8 189 30.2
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 3.8e-08 62.8 75 45.3
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 6.5e-08 62.0 113 32.7
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 8.5e-08 61.6 152 27.0
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.4e-07 60.8 157 29.3
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 1.9e-07 60.5 83 36.1
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 2.5e-07 60.1 75 45.3
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.2e-06 57.8 116 34.5
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 3.6e-06 56.2 167 28.1


User provided reference genes

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