Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 0.0e+00 1101.3 546 100.0
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 5.0e-267 924.1 558 82.4
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 1.9e-266 922.2 574 82.4
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 4.3e-218 761.5 575 71.1
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 4.0e-187 658.7 556 61.3
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 2.6e-186 656.0 555 60.7
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 6.3e-185 651.4 560 59.3
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.4e-184 649.4 559 59.4
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 3.1e-184 649.0 559 59.2
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 3.5e-183 645.6 556 59.4
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 4.5e-183 645.2 563 57.7
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 4.7e-180 635.2 550 59.6
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 6.1e-180 634.8 551 58.1
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 2.0e-178 629.8 584 57.2
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 6.3e-177 624.8 553 58.0
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.4e-176 623.6 552 57.2
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 1.8e-176 623.2 559 58.0
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 2.4e-176 622.9 556 57.7
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 1.6e-175 620.2 562 57.5
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 3.5e-175 619.0 560 57.1
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 6.5e-174 614.8 546 57.7
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 8.5e-174 614.4 543 58.9
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 1.9e-173 613.2 555 58.6
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 4.2e-173 612.1 559 57.1
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 1.4e-171 607.1 603 55.4
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 3.0e-171 605.9 595 54.8
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.0e-171 605.9 532 59.4
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 5.2e-171 605.1 542 58.3
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.2e-170 604.0 557 56.0
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 3.4e-170 602.4 542 58.3
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 1.1e-168 597.4 572 56.5
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 1.0e-166 590.9 575 55.0
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 5.0e-166 588.6 540 57.4
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 3.3e-165 585.9 570 53.5
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 5.6e-165 585.1 541 56.4
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 3.6e-164 582.4 539 54.9
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 8.0e-164 581.3 541 56.9
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 8.0e-164 581.3 551 55.9
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 8.0e-164 581.3 617 52.2
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.0e-163 580.9 539 56.6
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 1.8e-163 580.1 603 51.9
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 1.5e-162 577.0 603 51.9
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 9.8e-162 574.3 541 55.1
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 1.3e-161 573.9 540 55.7
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 2.2e-161 573.2 541 55.6
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 2.2e-161 573.2 546 55.7
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 2.2e-161 573.2 542 55.4
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 1.1e-160 570.9 536 55.0
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 4.1e-160 568.9 558 54.8
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 7.0e-160 568.2 553 54.6
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 9.2e-160 567.8 560 54.8
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 4.6e-159 565.5 551 53.5
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 3.9e-158 562.4 649 48.7
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 1.9e-157 560.1 556 54.0
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.4e-155 553.9 542 53.3
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 2.3e-155 553.1 568 51.8
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 4.0e-155 552.4 577 50.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.5e-154 550.4 557 52.4
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 1.7e-153 547.0 572 52.4
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.7e-153 545.8 501 57.3
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 7.8e-151 538.1 571 50.4
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.4e-147 527.3 498 54.8
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 3.4e-146 522.7 515 53.2
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 2.2e-145 520.0 493 54.2
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 9.2e-144 514.6 577 50.6
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 4.6e-143 512.3 516 54.3
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 4.6e-143 512.3 568 49.3
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.3e-137 494.2 567 48.0
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 8.6e-134 481.5 518 52.5
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 9.6e-133 478.0 521 49.3
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 2.1e-132 476.9 392 60.7
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 5.4e-128 462.2 546 48.2
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.3e-124 451.1 498 49.2
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 8.4e-121 438.3 503 48.7
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 1.9e-117 427.2 570 44.2
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 4.5e-114 416.0 369 58.3
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.7e-113 414.1 576 42.4
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 2.6e-106 390.2 607 38.9
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 7.4e-101 372.1 525 41.0
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 6.3e-100 369.0 340 55.6
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 5.3e-99 365.9 434 46.1
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.9e-93 347.4 367 52.6
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 4.3e-93 346.3 278 63.3
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 1.6e-87 327.8 367 50.4
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 1.0e-86 325.1 274 61.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 2.6e-85 320.5 345 51.0
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 1.8e-83 314.3 439 43.5
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.7e-76 291.2 292 52.4
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.5e-72 278.1 425 42.1
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 2.3e-70 270.8 246 56.9
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.1e-67 260.0 199 62.3
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 7.0e-67 259.2 290 50.0
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.6e-53 214.2 211 55.0
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 2.3e-49 201.1 241 48.1
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.6e-47 193.7 189 55.6
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.6e-47 193.7 189 55.6
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.4e-43 181.8 204 48.5
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 3.6e-39 167.2 99 77.8
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 4.7e-39 166.8 132 58.3
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 2.0e-37 161.4 175 49.7
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 2.9e-36 157.5 175 50.3
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 6.0e-34 149.8 190 49.5
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.0e-33 149.1 119 55.5
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 6.6e-33 146.4 101 68.3
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 5.2e-22 110.2 135 50.4
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 7.1e-19 99.8 132 42.4
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 4.2e-11 73.9 148 33.1
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 7.1e-11 73.2 95 43.2
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 3.3e-08 64.3 316 25.0


User provided reference genes

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