Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.2e-103 379.8 183 100.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.9e-77 292.7 183 76.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.8e-72 276.2 184 73.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.5e-63 245.4 183 64.5
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.3e-62 243.4 181 60.8
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 5.0e-62 241.5 181 60.8
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 6.6e-62 241.1 184 63.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.9e-61 239.6 183 62.8
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 3.3e-61 238.8 184 60.9
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.3e-61 238.4 183 58.5
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 5.6e-61 238.0 181 60.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 9.5e-61 237.3 183 61.2
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.2e-60 236.9 183 60.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.2e-60 236.9 183 60.7
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.8e-60 235.7 181 59.1
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 4.7e-60 235.0 183 60.1
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 6.2e-60 234.6 183 61.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.2e-60 234.6 181 59.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 6.2e-60 234.6 187 59.4
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.1e-59 233.8 183 59.6
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-59 233.8 183 59.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.8e-59 233.0 182 61.0
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.3e-59 232.6 183 59.0
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.0e-59 231.9 183 61.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 8.9e-59 230.7 181 56.4
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.5e-58 229.9 181 58.6
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.5e-58 229.9 181 61.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 2.0e-58 229.6 181 59.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.0e-58 229.6 183 59.0
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 2.0e-58 229.6 183 58.5
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.6e-58 229.2 183 61.2
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.6e-58 229.2 185 61.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.4e-58 228.8 183 60.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.4e-58 228.8 183 58.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.8e-58 228.0 179 62.0
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.8e-58 228.0 179 58.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.3e-57 226.9 183 59.6
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-57 226.5 183 57.9
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.7e-57 226.5 182 58.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.2e-57 226.1 183 59.0
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.2e-57 226.1 183 58.5
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 3.7e-57 225.3 183 59.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.7e-57 225.3 183 58.5
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.7e-57 225.3 184 59.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 3.7e-57 225.3 183 59.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 4.9e-57 224.9 183 59.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 6.4e-57 224.6 186 57.5
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 6.4e-57 224.6 183 60.1
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 8.3e-57 224.2 181 57.5
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 8.3e-57 224.2 184 59.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.1e-56 223.8 182 59.9
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.4e-56 223.4 183 56.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.9e-56 223.0 184 58.7
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.9e-56 223.0 183 57.4
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.9e-56 223.0 183 59.0
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.4e-56 222.6 182 56.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.4e-56 222.6 183 59.0
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.4e-56 222.6 181 59.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 3.2e-56 222.2 190 57.9
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.2e-56 222.2 169 62.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 5.4e-56 221.5 183 56.8
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.4e-56 221.5 178 57.3
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 9.2e-56 220.7 181 58.0
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.2e-56 220.7 183 59.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.6e-55 219.9 191 56.5
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.7e-55 219.2 183 60.1
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.7e-55 219.2 183 58.5
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 2.7e-55 219.2 178 58.4
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.5e-55 218.8 181 56.4
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.5e-55 218.8 181 57.5
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 4.6e-55 218.4 182 57.7
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.6e-55 218.4 181 59.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 6.0e-55 218.0 182 56.6
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 7.8e-55 217.6 183 55.7
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.0e-54 217.2 179 58.1
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-54 216.9 182 57.7
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.3e-54 216.9 182 57.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.3e-54 216.1 186 56.5
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.3e-54 216.1 181 58.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 6.6e-54 214.5 183 56.3
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 8.6e-54 214.2 182 56.6
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.9e-53 213.0 182 56.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.9e-53 213.0 182 56.0
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.9e-53 213.0 183 56.8
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.5e-53 212.6 182 52.7
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.3e-53 212.2 192 54.7
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 5.6e-53 211.5 164 61.6
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.3e-53 211.1 178 52.8
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 9.5e-53 210.7 177 56.5
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.1e-52 207.6 183 58.5
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.4e-51 206.8 183 53.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.8e-51 206.5 162 59.3
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 8.9e-51 204.1 169 59.2
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.4e-50 202.2 183 52.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 3.4e-50 202.2 162 56.8
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 4.4e-50 201.8 169 58.6
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.4e-50 201.8 202 51.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.8e-50 201.4 165 60.6
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 7.6e-50 201.1 183 55.7
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 9.9e-50 200.7 167 59.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.3e-49 200.3 180 50.6
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.2e-49 199.5 181 52.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.8e-49 198.7 163 58.9
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 4.9e-49 198.4 175 54.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 2.1e-47 193.0 184 51.1
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.3e-46 189.5 169 55.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.5e-45 186.8 163 56.4
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.5e-45 186.8 159 57.2
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.6e-45 184.9 162 54.3
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.2e-44 181.4 183 55.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.1e-43 180.6 187 49.7
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-41 172.6 169 47.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-41 172.2 169 47.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-41 171.8 167 47.9
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.9e-40 169.9 136 56.6
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 2.4e-40 169.5 136 59.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.2e-40 168.7 140 57.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.7e-39 166.0 162 51.9
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-38 162.9 153 49.7
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-38 162.5 166 45.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.5e-37 160.2 136 50.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 4.9e-33 145.2 184 40.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.4e-33 144.8 137 48.2
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-32 142.9 169 42.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.7e-31 139.4 182 41.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.3e-30 137.1 115 57.4
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.9e-30 135.6 194 39.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-30 135.2 126 49.2
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-28 130.2 138 47.1
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.1e-28 129.8 113 50.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-25 119.8 181 38.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 4.9e-25 118.6 87 62.1
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.3e-22 109.8 89 56.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.8e-20 102.1 98 46.9
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.1e-11 72.8 121 36.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-09 67.4 53 54.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.2e-09 66.6 45 68.9
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.5e-08 63.2 105 39.0
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.5e-08 63.2 44 68.2
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.5e-08 62.0 42 69.0
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 3.6e-07 59.3 41 68.3
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-06 57.0 41 63.4


User provided reference genes

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