Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.1e-178 629.8 311 100.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.1e-168 595.1 311 92.6
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.9e-166 587.8 311 91.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.7e-164 582.0 311 90.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.7e-147 526.2 313 82.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.1e-147 524.6 312 82.1
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.3e-146 521.9 309 83.2
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 7.3e-146 520.8 309 82.8
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 7.3e-146 520.8 313 82.1
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-145 518.8 312 83.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-145 518.8 312 83.0
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.7e-145 518.1 312 81.4
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 4.7e-145 518.1 309 81.6
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 6.2e-145 517.7 309 82.2
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.1e-144 515.4 316 79.4
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.0e-144 515.0 312 82.1
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 4.0e-144 515.0 311 81.4
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 9.0e-144 513.8 313 82.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 9.0e-144 513.8 312 80.4
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 9.0e-144 513.8 311 81.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 5.8e-143 511.1 313 79.9
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 9.9e-143 510.4 312 80.4
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.8e-142 508.4 312 79.5
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.9e-142 508.1 311 79.1
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 5.4e-141 504.6 331 76.7
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.1e-141 504.2 311 80.4
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.2e-140 503.4 309 79.3
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.2e-140 503.4 311 78.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.1e-140 502.7 313 78.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-140 502.3 312 78.5
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.7e-140 502.3 310 79.7
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.7e-140 502.3 310 80.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-140 501.9 311 80.1
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.6e-140 501.5 311 80.1
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.0e-140 501.1 305 80.3
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.8e-140 500.7 314 77.1
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.3e-139 500.0 308 78.9
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 2.3e-139 499.2 309 79.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.0e-139 498.8 311 79.1
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 5.1e-139 498.0 312 78.5
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.1e-139 498.0 309 79.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-138 496.9 312 78.5
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.1e-138 496.9 312 78.2
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.5e-138 496.5 309 78.6
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.9e-138 496.1 309 78.0
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.5e-138 495.7 309 79.0
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.5e-138 495.7 311 77.8
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.5e-138 495.7 312 79.2
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.3e-138 495.4 312 77.6
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 9.6e-138 493.8 310 78.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.6e-138 493.8 309 78.3
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-137 491.9 310 77.4
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 3.6e-137 491.9 312 77.6
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.6e-137 491.9 308 77.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 4.8e-137 491.5 311 78.5
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 324 75.6
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 311 77.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-136 490.3 310 77.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.1e-136 490.3 311 77.8
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.1e-136 490.3 312 77.2
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.4e-136 490.0 311 77.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.8e-136 489.6 312 76.9
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.4e-136 489.2 307 78.5
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.1e-136 488.8 315 76.5
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.0e-136 488.4 311 77.5
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 5.3e-136 488.0 324 73.8
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 5.3e-136 488.0 308 77.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 6.9e-136 487.6 319 74.3
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 9.0e-136 487.3 319 74.3
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 9.0e-136 487.3 311 76.2
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 2.0e-135 486.1 319 74.6
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.0e-135 486.1 309 77.3
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 9.9e-135 483.8 314 76.4
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 9.9e-135 483.8 309 77.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.7e-134 483.0 311 76.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.9e-134 482.3 313 76.4
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.8e-134 481.9 319 73.4
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 3.8e-134 481.9 311 76.5
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 4.2e-133 478.4 317 74.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.7e-131 471.1 312 75.3
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 6.7e-131 471.1 312 74.7
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 8.7e-131 470.7 321 72.0
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.1e-130 470.3 321 72.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.5e-130 469.9 308 75.3
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.5e-130 469.9 333 72.7
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.9e-130 469.5 308 76.0
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.5e-130 469.2 313 75.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 3.3e-130 468.8 321 71.7
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.3e-130 468.4 330 71.2
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.6e-130 468.0 312 73.4
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 7.4e-130 467.6 328 70.1
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 9.6e-130 467.2 318 72.6
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.8e-129 465.7 308 73.7
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 6.2e-129 464.5 282 80.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.1e-129 464.2 299 76.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-128 463.4 265 84.9
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.8e-128 463.0 309 74.1
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 2.4e-128 462.6 317 71.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.6e-127 459.1 282 79.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 4.5e-127 458.4 311 73.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.1e-125 453.8 268 82.5
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 4.2e-125 451.8 310 71.6
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 4.3e-122 441.8 257 83.3
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 7.4e-122 441.0 309 70.9
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.9e-118 429.1 323 68.1
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.5e-117 426.0 263 78.7
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 9.3e-117 424.1 320 67.2
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.6e-116 421.8 305 70.2
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 7.9e-116 421.0 313 67.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.4e-112 409.5 307 67.1
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 6.9e-112 407.9 322 64.9
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 6.1e-108 394.8 221 86.4
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.1e-106 390.6 311 66.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 9.1e-104 380.9 322 60.9
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.5e-103 380.2 312 65.4
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 4.7e-100 368.6 332 57.8
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 6.1e-100 368.2 227 76.7
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.8e-99 364.4 301 63.5
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 8.8e-99 364.4 307 62.2
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.5e-98 363.6 231 76.6
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 4.1e-96 355.5 339 53.7
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 8.2e-89 331.3 204 79.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 9.1e-88 327.8 226 72.6
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 6.1e-84 315.1 320 55.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.4e-82 309.3 235 63.8
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 4.8e-81 305.4 165 89.7
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.2e-79 300.8 210 71.4
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.5e-74 283.9 271 55.0
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 7.0e-72 275.0 157 84.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.2e-71 274.2 312 48.4
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 2.8e-68 263.1 361 42.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-66 257.7 173 76.3
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.5e-66 257.3 150 82.0
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-60 237.7 134 85.1
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.8e-60 236.5 170 65.9
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.8e-59 233.8 164 69.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.1e-52 208.4 112 88.4
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 8.1e-52 208.4 131 77.9
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-51 207.6 120 83.3
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-50 204.1 121 81.8
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-50 203.8 121 81.8
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-50 203.8 121 81.8
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 3.4e-50 203.0 233 46.8
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-50 201.8 121 81.0
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.8e-50 201.4 117 83.8
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.8e-50 201.4 116 83.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-49 200.3 117 82.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.9e-48 197.2 118 80.5
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-48 196.8 117 80.3
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.3e-46 190.3 241 47.7
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.3e-45 186.4 295 42.0
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.7e-44 182.6 157 62.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 3.7e-41 172.9 101 82.2
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 6.4e-41 172.2 101 81.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.3e-41 171.8 93 88.2
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.4e-35 153.7 135 58.5
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 4.9e-33 146.0 94 74.5
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-33 145.6 84 81.0
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 9.9e-26 121.7 95 63.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 9.9e-26 121.7 95 63.2
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-22 108.6 64 81.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-21 107.5 64 81.2
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.3e-21 106.7 92 60.9
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.6e-20 104.4 74 74.3
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.8e-20 103.6 107 56.1
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.6e-20 103.2 92 59.8
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-19 100.9 92 58.7
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.7e-17 94.4 75 64.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.9e-17 92.8 62 67.7
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.4e-17 92.4 81 59.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 4.2e-16 89.7 49 81.6
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 4.2e-16 89.7 49 81.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 9.3e-16 88.6 47 80.9
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-15 88.2 49 79.6
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.2e-15 88.2 49 79.6
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.2e-15 88.2 230 29.6
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 5.8e-10 69.3 66 57.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 7.6e-10 68.9 125 39.2
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 3.8e-09 66.6 153 33.3


User provided reference genes

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