Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.0e-94 350.1 186 100.0
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.9e-64 249.6 188 74.5
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.3e-61 238.8 203 62.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 7.4e-61 237.7 188 74.5
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.1e-59 233.8 188 73.9
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.2e-38 161.8 193 43.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.2e-37 160.6 196 45.4
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.3e-37 159.1 208 43.3
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 5.7e-37 158.3 210 41.9
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.8e-35 153.3 204 46.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 3.1e-35 152.5 201 46.3
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.1e-35 152.5 99 67.7
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.1e-35 152.1 198 45.5
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 7.0e-35 151.4 209 46.9
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 7.0e-35 151.4 203 42.4
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 7.0e-35 151.4 205 43.9
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 7.0e-35 151.4 205 43.9
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 9.1e-35 151.0 219 41.1
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.2e-34 150.6 99 64.6
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.2e-34 150.6 100 67.0
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.6e-34 150.2 99 64.6
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.0e-34 149.8 214 40.2
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 2.0e-34 149.8 183 45.9
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.5e-34 148.7 195 44.1
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.0e-33 147.5 99 63.6
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.2e-33 146.4 203 39.9
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.9e-33 146.0 138 52.9
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.5e-33 144.8 176 48.3
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 6.5e-33 144.8 99 68.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.9e-32 143.3 106 63.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 1.9e-32 143.3 209 40.2
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.2e-32 142.1 198 43.9
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.5e-32 141.7 180 48.3
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 5.5e-32 141.7 198 43.9
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 7.2e-32 141.4 88 68.2
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.2e-31 140.6 132 54.5
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.2e-31 140.6 99 61.6
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.1e-31 139.8 211 39.8
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.7e-31 139.4 196 41.8
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 2.7e-31 139.4 209 38.3
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.6e-31 139.0 99 66.7
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 4.7e-31 138.7 177 43.5
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 6.1e-31 138.3 100 65.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 6.1e-31 138.3 99 62.6
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 6.1e-31 138.3 191 41.9
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 6.1e-31 138.3 131 55.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 8.0e-31 137.9 99 59.6
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 8.0e-31 137.9 194 42.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-30 137.5 88 71.6
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.4e-30 137.1 125 57.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.4e-30 137.1 99 63.6
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.4e-30 137.1 191 41.9
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.8e-30 136.7 112 58.0
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.8e-30 136.7 87 70.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.8e-30 136.7 129 54.3
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.3e-30 136.3 100 62.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.3e-30 136.3 213 39.9
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.3e-30 136.3 132 55.3
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.0e-30 136.0 88 70.5
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.0e-30 136.0 88 70.5
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 3.0e-30 136.0 109 59.6
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 4.0e-30 135.6 88 69.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.0e-30 135.6 88 70.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 5.2e-30 135.2 88 70.5
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 6.8e-30 134.8 86 73.3
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.8e-30 134.8 88 69.3
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 8.8e-30 134.4 87 69.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.2e-29 134.0 106 62.3
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.2e-29 134.0 99 60.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.4e-29 132.5 88 71.6
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 7.5e-29 131.3 99 60.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.8e-29 131.0 85 68.2
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 9.8e-29 131.0 99 59.6
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.3e-28 130.6 87 66.7
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.2e-28 129.8 84 72.6
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.8e-28 129.4 85 67.1
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.7e-28 129.0 89 65.2
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.7e-28 129.0 89 65.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.7e-28 129.0 89 65.2
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.8e-28 128.6 85 67.1
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.3e-28 127.9 189 40.2
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-27 127.5 86 68.6
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.4e-27 127.1 87 65.5
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.8e-27 126.7 89 64.0
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 2.4e-27 126.3 187 41.7
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.4e-27 126.3 88 67.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.4e-27 126.3 84 69.0
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 9.1e-27 124.4 99 55.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.1e-27 124.4 85 64.7
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.2e-26 124.0 179 40.2
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-26 122.9 181 38.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.5e-26 122.5 87 63.2
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.0e-25 120.9 87 63.2
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.7e-25 120.2 87 60.9
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-25 119.8 87 60.9
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-25 119.8 99 58.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 2.9e-25 119.4 184 40.2
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.5e-24 116.3 220 35.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.5e-24 116.3 100 56.0
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.5e-24 116.3 100 56.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.6e-23 113.6 90 55.6
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-23 113.2 93 55.9
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.6e-23 112.5 99 57.6
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.6e-23 112.5 99 57.6
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.2e-22 108.6 84 59.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.2e-22 108.6 84 59.5
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 6.8e-22 108.2 84 58.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 6.8e-22 108.2 84 58.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 6.8e-22 108.2 84 58.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 6.8e-22 108.2 87 60.9
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 8.9e-22 107.8 99 54.5
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.6e-21 106.3 88 55.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.4e-21 105.5 88 55.7
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.3e-20 104.0 166 39.8
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.2e-20 103.2 99 48.5
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 3.7e-20 102.4 133 43.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.7e-20 102.4 192 37.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.3e-20 101.7 90 56.7
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.3e-20 101.7 198 36.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-19 100.9 87 56.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-19 100.9 87 56.3
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.8e-19 100.1 87 56.3
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.8e-19 100.1 87 56.3
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-19 100.1 90 55.6
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-19 100.1 194 36.1
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.4e-19 99.8 99 46.5
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.4e-19 99.8 99 49.5
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 4.1e-19 99.0 124 42.7
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 5.4e-19 98.6 87 55.2
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 7.0e-19 98.2 137 43.1
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.2e-18 97.4 200 34.0
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.6e-18 97.1 87 55.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.0e-18 96.7 87 54.0
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.5e-18 95.9 99 48.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.7e-17 93.6 96 52.1
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.7e-17 93.6 129 44.2
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.3e-17 93.2 87 52.9
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-17 92.8 96 49.0
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-17 92.8 87 51.7
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-17 92.8 96 49.0
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-17 92.8 87 51.7
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 3.9e-17 92.4 118 42.4
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 3.9e-17 92.4 118 42.4
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 5.0e-17 92.0 87 52.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 5.0e-17 92.0 87 52.9
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 6.6e-17 91.7 103 46.6
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 8.6e-17 91.3 90 48.9
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 9.5e-16 87.8 103 48.5
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.2e-15 87.4 76 53.9
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.2e-14 82.0 132 37.1
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.2e-13 80.9 193 31.1
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.6e-13 79.7 63 57.1
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.4e-13 79.3 118 39.8
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.7e-12 77.0 87 47.1
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 6.4e-12 75.1 114 41.2
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.4e-12 75.1 67 52.2
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.4e-11 73.9 86 47.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.4e-11 73.9 53 67.9
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.2e-11 72.8 87 48.3
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.7e-09 67.0 86 43.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 2.3e-09 66.6 99 43.4
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 8.6e-09 64.7 86 43.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 1.1e-08 64.3 178 30.9
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 5.6e-08 62.0 107 43.0
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 6.2e-07 58.5 179 30.7
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 8.0e-07 58.2 51 60.8
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 8.0e-07 58.2 51 60.8


User provided reference genes

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