Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 7.4e-297 1023.1 509 100.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.2e-265 919.5 512 90.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.5e-260 902.5 535 86.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.5e-260 902.5 512 88.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.9e-213 745.0 513 74.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 4.3e-212 741.5 511 75.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-212 740.7 513 73.7
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 9.6e-212 740.3 513 72.9
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.8e-211 738.8 513 73.7
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.3e-210 734.6 520 72.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.5e-209 733.0 513 73.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 5.5e-207 724.5 510 71.6
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 9.3e-207 723.8 515 71.7
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-205 719.5 513 73.1
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.8e-205 719.5 512 71.3
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.3e-203 713.4 510 71.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.2e-203 712.6 509 69.7
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.8e-203 712.2 514 70.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.7e-203 711.8 510 70.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.1e-202 708.8 512 69.7
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 9.0e-202 707.2 512 70.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.2e-201 706.8 512 69.5
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.0e-201 706.1 510 68.4
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.6e-201 705.7 510 70.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.4e-201 705.3 514 71.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.5e-201 704.9 512 69.5
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 7.6e-201 704.1 516 69.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.9e-200 702.2 511 68.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.4e-199 699.9 512 68.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.9e-199 699.5 512 70.5
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 4.2e-199 698.4 510 68.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-199 698.0 513 70.8
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-199 698.0 513 70.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.5e-199 698.0 510 69.4
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 7.2e-199 697.6 510 68.8
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 9.3e-199 697.2 510 68.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 9.3e-199 697.2 511 69.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 4.6e-198 694.9 514 69.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.6e-198 694.9 513 70.2
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.0e-197 692.2 516 70.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 5.1e-197 691.4 510 67.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 6.7e-197 691.0 510 68.2
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.3e-195 684.5 511 67.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 8.2e-195 684.1 512 67.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.4e-194 683.3 516 67.8
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 511 68.9
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 6.9e-194 681.0 512 66.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 9.1e-194 680.6 512 66.6
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 9.1e-194 680.6 512 68.8
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.5e-193 679.9 512 68.4
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.5e-193 679.9 574 62.9
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.2e-192 676.0 512 69.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.2e-192 676.0 514 66.5
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.8e-192 675.2 517 67.3
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 2.5e-191 672.5 513 66.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.5e-191 671.4 520 65.6
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.6e-190 669.8 513 67.3
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.1e-190 669.5 513 66.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 3.6e-190 668.7 511 66.9
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.4e-189 666.8 513 66.9
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.8e-189 666.4 595 60.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.3e-189 666.0 511 67.5
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 8.8e-189 664.1 511 66.5
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 4.4e-188 661.8 511 66.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.7e-187 658.7 513 65.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 4.8e-187 658.3 513 65.9
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.8e-187 658.3 525 64.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.4e-186 656.0 512 66.4
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.1e-186 655.2 510 65.5
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 5.3e-186 654.8 512 66.2
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.1e-186 654.1 513 64.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.0e-185 652.9 512 66.0
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.0e-185 652.9 506 65.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 5.9e-185 651.4 511 65.9
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.7e-184 649.8 511 65.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.7e-184 649.8 518 65.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.9e-184 649.0 511 65.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 6.5e-184 647.9 508 65.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.4e-183 646.7 512 64.8
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 3.6e-182 642.1 459 70.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.0e-181 639.0 433 71.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.0e-180 636.3 498 66.7
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 7.4e-180 634.4 509 64.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.7e-179 633.3 460 69.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.6e-177 626.7 508 62.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.0e-176 621.7 497 63.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.2e-175 619.0 506 63.2
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 9.4e-175 617.5 556 60.6
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.4e-175 617.5 500 63.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 9.4e-175 617.5 513 64.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.2e-174 617.1 508 61.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-173 614.0 548 59.3
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.4e-173 613.6 505 63.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-172 610.1 440 68.9
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 9.7e-172 607.4 458 65.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 2.2e-171 606.3 488 63.5
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.8e-170 603.2 437 69.8
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.8e-165 586.6 463 65.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.2e-165 585.1 522 59.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 6.3e-163 578.2 499 61.7
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.1e-162 575.9 423 70.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.5e-161 572.4 439 67.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.2e-153 547.4 460 60.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.5e-151 539.7 356 75.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.0e-144 516.2 380 69.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-143 513.5 372 68.8
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 7.3e-143 511.5 502 53.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-141 505.0 416 62.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 8.9e-141 504.6 510 55.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.0e-133 479.2 449 57.9
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.9e-122 443.7 388 61.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 6.2e-118 428.7 530 45.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.4e-116 422.5 372 60.2
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.6e-113 414.1 495 47.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.5e-111 407.5 447 49.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.5e-108 396.0 392 55.9
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-106 389.0 510 45.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.1e-101 373.2 286 65.0
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-97 361.3 324 59.6
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.5e-79 301.2 399 47.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 5.9e-76 289.3 467 37.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.9e-74 284.3 472 41.5
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 7.4e-71 272.3 462 36.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.7e-67 261.2 242 58.3
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.7e-57 227.3 216 59.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 4.7e-57 226.5 368 36.7
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.4e-53 214.9 460 32.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-53 214.5 163 67.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 5.7e-39 166.4 246 39.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.3e-38 162.5 102 78.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.4e-37 161.8 207 41.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-34 151.0 92 77.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.4e-32 145.2 134 59.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.2e-25 122.1 108 58.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.6e-25 120.6 343 27.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.6e-15 86.3 60 71.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.1e-13 79.7 49 81.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 2.3e-11 74.7 44 75.0
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-10 72.0 66 62.1
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 3.1e-08 64.3 75 48.0
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 2.9e-06 57.8 238 26.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 8.4e-06 56.2 239 27.2


User provided reference genes

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