Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009648 Sechium edule HOM05D000955 ORTHO05D001429 4.2e-37 157.5 81 100.0
MELO3C010865.2 Cucumis melo HOM05D000955 ORTHO05D001429 8.6e-22 106.7 80 67.5
CsaV3_2G027850 Cucumis sativus L. HOM05D000955 ORTHO05D001429 1.9e-21 105.5 80 65.0
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 3.5e-15 84.7 70 62.9
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 3.9e-14 81.3 69 62.3
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 6.6e-14 80.5 69 60.9
CsaV3_2G027840 Cucumis sativus L. HOM05D000955 ORTHO05D001429 3.6e-12 74.7 65 61.5
Sed0026745 Sechium edule HOM05D000955 ORTHO05D001429 5.2e-11 70.9 74 45.9
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 6.8e-11 70.5 68 48.5
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.4e-10 67.8 71 50.7
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 7.5e-10 67.0 72 44.4
Sed0010424 Sechium edule HOM05D000955 ORTHO05D001429 7.5e-10 67.0 75 41.3
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 9.9e-10 66.6 67 47.8
MELO3C010864.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.7e-09 65.9 73 46.6
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 3.7e-09 64.7 68 45.6
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 6.4e-09 63.9 68 44.1
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 6.4e-09 63.9 69 42.0
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 1.1e-08 63.2 68 47.1
Thecc.04G032100 Theobroma cacao HOM05D000955 ORTHO05D001429 1.1e-08 63.2 69 47.8
ClCG08G015900 Citrullus lanatus HOM05D000955 ORTHO05D001429 1.4e-08 62.8 59 52.5
CsaV3_4G034250 Cucumis sativus L. HOM05D000955 ORTHO05D001429 1.4e-08 62.8 72 40.3
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.9e-08 62.4 70 45.7
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 1.9e-08 62.4 70 44.3
COL.COLO4_17164 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.4e-08 62.0 68 50.0
MELO3C016745.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.4e-08 62.0 70 42.9
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 4.1e-08 61.2 69 44.9
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 4.1e-08 61.2 69 50.7
Sed0006046 Sechium edule HOM05D000955 ORTHO05D001429 4.1e-08 61.2 67 44.8
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 5.4e-08 60.8 67 46.3
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.1e-08 60.5 70 41.4
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 7.1e-08 60.5 70 42.9
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 7.1e-08 60.5 70 42.9
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.1e-08 60.5 69 42.0
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.1e-08 60.5 69 42.0
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 7.1e-08 60.5 67 41.8
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 7.1e-08 60.5 67 46.3
Cfa018544 Carpinus fangiana HOM05D000955 ORTHO05D001429 9.2e-08 60.1 69 40.6
CsaV3_4G034260 Cucumis sativus L. HOM05D000955 ORTHO05D001429 9.2e-08 60.1 67 44.8
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 9.2e-08 60.1 74 41.9
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 9.2e-08 60.1 70 45.7
Medtr1g019600 Medicago truncatula HOM05D000955 ORTHO05D001429 1.2e-07 59.7 73 45.2
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 1.2e-07 59.7 69 44.9
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 1.6e-07 59.3 69 47.8
MELO3C016746.2 Cucumis melo HOM05D000955 ORTHO05D001429 1.6e-07 59.3 67 44.8
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 1.6e-07 59.3 69 37.7
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.6e-07 59.3 70 41.4
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.1e-07 58.9 73 41.1
ClCG05G019800 Citrullus lanatus HOM05D000955 ORTHO05D001429 2.1e-07 58.9 72 38.9
ClCG08G015910 Citrullus lanatus HOM05D000955 ORTHO05D001429 2.1e-07 58.9 49 63.3
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 2.1e-07 58.9 70 44.3
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 2.1e-07 58.9 68 44.1
Sed0014484 Sechium edule HOM05D000955 ORTHO05D001429 2.1e-07 58.9 50 60.0
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 2.7e-07 58.5 70 44.3
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.7e-07 58.5 71 38.0
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 2.7e-07 58.5 67 40.3
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 2.7e-07 58.5 68 44.1
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 3.5e-07 58.2 70 40.0
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 3.5e-07 58.2 69 43.5
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.6e-07 57.8 68 44.1
Sed0022742 Sechium edule HOM05D000955 ORTHO05D001429 4.6e-07 57.8 47 66.0
Sed0024453 Sechium edule HOM05D000955 ORTHO05D001429 4.6e-07 57.8 74 36.5
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 6.0e-07 57.4 68 39.7
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 6.0e-07 57.4 68 39.7
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.0e-07 57.4 68 44.1
Sed0019585 Sechium edule HOM05D000955 ORTHO05D001429 6.0e-07 57.4 74 35.1
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.8e-07 57.0 72 40.3
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 7.8e-07 57.0 69 39.1
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.8e-07 57.0 65 44.6
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.8e-07 57.0 70 42.9
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.8e-07 57.0 70 42.9
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 1.0e-06 56.6 69 36.2
Sed0008843 Sechium edule HOM05D000955 ORTHO05D001429 1.0e-06 56.6 70 41.4
Sed0021895 Sechium edule HOM05D000955 ORTHO05D001429 1.0e-06 56.6 72 38.9
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 1.3e-06 56.2 69 40.6
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 1.7e-06 55.8 72 40.3
Dinv29919 Davidia involucrata HOM05D000955 ORTHO05D001429 1.7e-06 55.8 71 45.1
Sed0018620 Sechium edule HOM05D000955 ORTHO05D001429 1.7e-06 55.8 67 41.8
HanXRQChr09g0267701 Helianthus annuus HOM05D000955 ORTHO05D001429 2.3e-06 55.5 69 42.0
Sc15g0003450 Simmondsia chinensis HOM05D000955 ORTHO05D001429 2.3e-06 55.5 67 40.3
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 3.0e-06 55.1 68 38.2
ClCG08G015800 Citrullus lanatus HOM05D000955 ORTHO05D001429 3.0e-06 55.1 69 44.9
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.0e-06 55.1 68 38.2
COL.COLO4_26501 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.0e-06 55.1 68 42.6
Gohir.A05G261550 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.0e-06 55.1 66 45.5
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.0e-06 55.1 69 40.6
TWI36G1691 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 3.0e-06 55.1 66 45.5
CiPaw.15G059600 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.9e-06 54.7 69 42.0
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 3.9e-06 54.7 61 42.6
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.9e-06 54.7 65 44.6
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.9e-06 54.7 65 44.6
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 3.9e-06 54.7 69 40.6
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 3.9e-06 54.7 68 39.7
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 5.1e-06 54.3 68 42.6
Cfa018540 Carpinus fangiana HOM05D000955 ORTHO05D001429 5.1e-06 54.3 67 41.8
ClCG08G015790 Citrullus lanatus HOM05D000955 ORTHO05D001429 5.1e-06 54.3 70 42.9
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 5.1e-06 54.3 68 42.6
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 5.1e-06 54.3 68 41.2
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.1e-06 54.3 73 37.0
Sed0017113 Sechium edule HOM05D000955 ORTHO05D001429 5.1e-06 54.3 70 38.6
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 5.1e-06 54.3 69 37.7
Atru.chr13.678 Acer truncatum HOM05D000955 ORTHO05D001429 6.6e-06 53.9 59 47.5
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 6.6e-06 53.9 67 40.3
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 6.6e-06 53.9 67 46.3
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 6.6e-06 53.9 71 40.8
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-06 53.9 69 39.1
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-06 53.9 68 39.7
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-06 53.9 68 39.7
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 6.6e-06 53.9 67 43.3
Sed0022222 Sechium edule HOM05D000955 ORTHO05D001429 6.6e-06 53.9 74 33.8
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 6.6e-06 53.9 68 41.2
Cpa.g.sc49.10 Carica papaya HOM05D000955 ORTHO05D001429 8.6e-06 53.5 71 38.0
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 8.6e-06 53.5 68 41.2
Prupe.1G437300 Prunus persica HOM05D000955 ORTHO05D003340 8.6e-06 53.5 64 39.1
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 8.6e-06 53.5 67 38.8
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 8.6e-06 53.5 68 38.2
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 8.6e-06 53.5 68 36.8


User provided reference genes

Program Settings