Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 4.1e-75 284.6 144 100.0
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 3.6e-55 218.4 147 78.9
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.2e-53 213.4 147 76.9
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 1.2e-53 213.4 147 76.9
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 4.6e-50 201.4 144 75.7
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 2.5e-40 169.1 145 63.4
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.2e-39 166.8 160 60.6
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 1.4e-38 163.3 146 63.7
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.2e-37 160.2 122 64.8
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 1.5e-37 159.8 152 60.5
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 1.5e-37 159.8 144 56.9
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 1.5e-37 159.8 135 60.7
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 2.0e-37 159.5 144 57.6
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 3.4e-37 158.7 153 61.4
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 4.4e-37 158.3 138 59.4
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 4.4e-37 158.3 144 61.1
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 4.4e-37 158.3 99 76.8
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 4.4e-37 158.3 146 61.6
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 5.8e-37 157.9 147 59.2
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 5.8e-37 157.9 126 63.5
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 9.9e-37 157.1 144 56.9
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.7e-36 156.4 115 67.0
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 2.2e-36 156.0 110 71.8
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 3.7e-36 155.2 108 71.3
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.9e-36 154.8 145 58.6
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 4.9e-36 154.8 111 71.2
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 6.4e-36 154.5 135 60.7
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 6.4e-36 154.5 108 71.3
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 8.3e-36 154.1 115 69.6
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.1e-35 153.7 102 71.6
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 1.1e-35 153.7 143 56.6
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 1.4e-35 153.3 137 59.9
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.4e-35 152.5 109 68.8
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.4e-35 152.5 100 73.0
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.2e-35 152.1 142 56.3
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 3.2e-35 152.1 142 56.3
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 3.2e-35 152.1 98 75.5
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 4.1e-35 151.8 109 71.6
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 4.1e-35 151.8 112 69.6
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.2e-34 150.2 140 55.0
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 1.6e-34 149.8 99 73.7
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 1.6e-34 149.8 145 57.2
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 1.6e-34 149.8 132 59.1
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.1e-34 149.4 101 72.3
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 2.1e-34 149.4 96 75.0
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 4.6e-34 148.3 153 52.9
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 6.0e-34 147.9 143 57.3
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 1.0e-33 147.1 151 58.3
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 2.3e-33 146.0 103 66.0
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 5.1e-33 144.8 121 59.5
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 6.6e-33 144.4 142 53.5
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 8.6e-33 144.1 139 59.7
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.1e-32 143.7 98 69.4
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.1e-32 143.7 146 58.9
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.5e-32 143.3 98 67.3
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 1.9e-32 142.9 100 70.0
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.5e-32 142.5 116 62.9
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 4.3e-32 141.7 141 51.8
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 5.6e-32 141.4 98 70.4
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 7.3e-32 141.0 147 53.1
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 1.2e-31 140.2 127 56.7
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 1.2e-31 140.2 96 66.7
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 1.2e-31 140.2 96 67.7
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.6e-31 139.8 126 59.5
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 2.8e-31 139.0 98 69.4
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 6.2e-31 137.9 147 49.0
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 6.2e-31 137.9 147 49.0
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.4e-30 136.7 98 64.3
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.8e-30 136.3 97 68.0
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 1.8e-30 136.3 143 50.3
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 2.4e-30 136.0 143 50.3
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 6.8e-30 134.4 111 59.5
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 6.8e-30 134.4 98 66.3
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 8.9e-30 134.0 97 67.0
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 1.5e-29 133.3 145 49.7
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 2.6e-29 132.5 100 63.0
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 4.4e-29 131.7 146 51.4
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 5.8e-29 131.3 96 62.5
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 7.6e-29 131.0 96 62.5
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 7.6e-29 131.0 96 61.5
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 7.6e-29 131.0 108 59.3
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 1.3e-28 130.2 93 63.4
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 1.7e-28 129.8 104 59.6
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 2.2e-28 129.4 125 54.4
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 2.2e-28 129.4 111 60.4
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 2.9e-28 129.0 93 63.4
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 2.9e-28 129.0 93 63.4
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 2.9e-28 129.0 104 58.7
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 2.9e-28 129.0 98 62.2
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 3.8e-28 128.6 111 58.6
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 3.8e-28 128.6 97 66.0
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 8.4e-28 127.5 111 56.8
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.4e-27 126.7 98 62.2
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 1.9e-27 126.3 129 52.7
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 2.4e-27 125.9 101 62.4
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 5.4e-27 124.8 102 57.8
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 9.2e-27 124.0 97 62.9
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 9.2e-27 124.0 93 61.3
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 1.6e-26 123.2 162 45.1
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.5e-26 122.1 92 60.9
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 6.0e-26 121.3 166 44.0
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 1.7e-25 119.8 183 42.1
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 8.7e-25 117.5 115 53.9
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 2.5e-24 115.9 111 59.5
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 4.0e-22 108.6 85 63.5
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 1.5e-21 106.7 83 63.9
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 3.4e-21 105.5 108 55.6
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 2.2e-20 102.8 177 37.3
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 6.4e-20 101.3 61 77.0
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 1.6e-18 96.7 55 85.5
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 7.8e-18 94.4 57 73.7
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 3.0e-17 92.4 146 39.0
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.5e-16 90.1 109 51.4
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 1.9e-16 89.7 105 41.9
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 1.5e-13 80.1 118 33.1
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 3.4e-13 79.0 112 36.6
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 3.4e-13 79.0 91 47.3
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 7.6e-13 77.8 96 40.6
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 7.9e-10 67.8 46 67.4
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 2.8e-07 59.3 95 34.7
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 2.4e-06 56.2 96 30.2
MBI13_g38674_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 4.0e-06 55.5 87 40.2


User provided reference genes

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