Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 6.5e-134 480.7 240 100.0
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 4.2e-117 424.9 237 86.5
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 7.0e-104 380.9 240 75.8
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 2.7e-103 379.0 238 75.2
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.5e-101 373.2 240 75.0
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 5.5e-101 371.3 240 74.2
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 5.5e-101 371.3 240 75.0
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.6e-100 369.8 240 74.6
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 2.1e-100 369.4 240 73.8
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 3.6e-100 368.6 240 73.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 5.2e-99 364.8 240 71.7
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 6.8e-99 364.4 200 87.5
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.2e-98 363.6 240 71.7
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.2e-98 363.6 240 72.5
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.5e-98 363.2 236 71.2
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 2.6e-98 362.5 240 70.8
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 5.7e-98 361.3 240 70.4
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 5.7e-98 361.3 240 70.4
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 9.8e-98 360.5 230 74.3
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.4e-96 356.7 240 69.6
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.1e-96 355.5 239 69.9
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.1e-96 355.5 240 70.8
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 4.1e-96 355.1 240 68.3
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 5.4e-96 354.8 240 68.8
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 7.0e-96 354.4 240 70.4
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 2.0e-95 352.8 240 69.2
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 2.0e-95 352.8 240 69.2
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 2.7e-95 352.4 233 70.8
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 4.5e-95 351.7 239 68.6
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 4.5e-95 351.7 240 69.2
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 5.9e-95 351.3 238 68.5
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.3e-94 350.1 236 72.0
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 2.9e-94 349.0 240 73.3
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 5.0e-94 348.2 238 68.9
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 8.6e-94 347.4 240 67.9
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 2.5e-93 345.9 238 69.7
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 7.3e-93 344.4 240 69.6
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.2e-92 343.6 238 66.8
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 2.8e-92 342.4 240 68.3
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 3.6e-92 342.0 236 69.5
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 3.6e-92 342.0 240 69.2
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 5.2e-91 338.2 239 66.5
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 8.9e-91 337.4 240 68.8
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 2.0e-90 336.3 239 66.1
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 4.4e-90 335.1 240 68.8
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 8.3e-89 330.9 238 67.2
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 4.1e-88 328.6 235 66.0
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.7e-87 325.9 268 62.3
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 2.3e-86 322.8 233 63.9
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 1.2e-84 317.0 237 63.3
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.0e-83 313.9 200 74.0
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 1.2e-82 310.5 237 61.6
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 1.5e-82 310.1 236 61.9
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 4.4e-82 308.5 240 64.2
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.7e-81 306.6 232 64.2
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.7e-81 306.6 241 59.3
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 2.9e-81 305.8 207 72.0
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-80 303.9 193 72.5
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.4e-80 303.5 239 60.7
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 1.2e-79 300.4 205 69.3
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 4.6e-79 298.5 240 63.8
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 6.0e-79 298.1 206 70.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 1.3e-78 297.0 240 62.1
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 1.7e-78 296.6 240 65.8
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 5.0e-78 295.0 206 69.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 1.2e-74 283.9 240 60.8
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 2.6e-74 282.7 240 60.4
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 4.4e-74 282.0 240 60.0
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 7.5e-74 281.2 240 60.4
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 9.8e-74 280.8 240 60.4
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 1.3e-73 280.4 240 58.8
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 3.7e-73 278.9 235 58.3
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 6.4e-73 278.1 240 59.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.4e-73 278.1 240 59.2
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 8.3e-73 277.7 239 59.4
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.4e-72 276.9 171 77.2
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.9e-72 276.6 240 58.8
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 1.9e-72 276.6 240 57.9
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.1e-71 273.1 241 58.9
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 3.6e-68 262.3 206 63.1
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.7e-68 261.9 137 90.5
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 4.0e-67 258.8 283 51.2
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.5e-66 256.9 241 56.0
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 2.9e-65 252.7 175 66.9
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 6.4e-65 251.5 171 70.2
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 3.2e-64 249.2 137 88.3
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 4.6e-63 245.4 264 48.5
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 4.4e-58 228.8 240 53.3
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 3.2e-56 222.6 137 74.5
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.7e-55 219.5 240 51.2
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 4.6e-55 218.8 233 48.9
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.6e-55 218.8 191 57.6
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 3.3e-53 212.6 240 46.7
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 7.3e-53 211.5 172 62.2
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 9.6e-53 211.1 230 51.7
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.2e-52 208.4 233 48.1
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.8e-51 206.8 239 48.1
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 2.6e-50 203.0 136 71.3
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 2.9e-49 199.5 157 63.7
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 2.4e-48 196.4 289 41.9
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 8.7e-46 188.0 108 83.3
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.6e-44 183.7 107 79.4
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 4.8e-44 182.2 234 43.6
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 5.3e-43 178.7 171 52.6
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.6e-42 176.4 129 65.9
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 8.4e-41 171.4 174 52.3
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.2e-39 167.5 238 42.9
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 2.4e-35 153.3 234 39.7
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 5.8e-34 148.7 108 67.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 3.5e-31 139.4 239 35.6
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.9e-30 136.0 105 64.8
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 4.3e-29 132.5 220 37.7
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 4.8e-28 129.0 241 37.3
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.4e-27 127.5 114 59.6
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 3.1e-27 126.3 91 65.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 5.3e-27 125.6 118 58.5
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 2.6e-26 123.2 104 61.5
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.6e-26 121.7 91 63.7
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 5.0e-25 119.0 91 62.6
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.4e-24 117.5 123 51.2
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.8e-22 110.5 65 83.1
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 8.7e-22 108.2 108 54.6
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.5e-21 106.7 107 50.5
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.8e-20 103.2 241 33.6
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 6.5e-17 92.0 68 67.6
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 1.1e-16 91.3 71 63.4
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 3.6e-15 86.3 92 51.1
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 8.8e-14 81.6 191 30.9
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 4.4e-13 79.3 85 54.1
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-09 68.2 63 52.4
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 1.0e-09 68.2 51 58.8
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 6.5e-09 65.5 56 55.4
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 2.1e-07 60.5 45 57.8


User provided reference genes

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