Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 7.3e-68 260.4 128 100.0
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 4.6e-54 214.5 128 81.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 4.3e-52 208.0 128 80.5
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.8e-50 202.6 128 78.9
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 3.0e-37 158.7 128 66.4
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 8.8e-37 157.1 131 60.3
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.3e-35 153.3 129 61.2
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 4.8e-35 151.4 139 56.8
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 6.3e-35 151.0 128 60.2
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.1e-34 150.2 131 58.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.8e-34 149.4 131 58.8
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.4e-34 149.1 131 59.5
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 3.1e-34 148.7 131 59.5
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 4.1e-34 148.3 131 59.5
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 4.1e-34 148.3 131 59.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 4.1e-34 148.3 131 59.5
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.3e-34 147.9 131 58.8
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.9e-34 147.5 131 58.0
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.1e-34 147.1 127 55.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.5e-33 146.4 127 55.9
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.5e-33 146.4 121 58.7
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.0e-33 146.0 128 56.2
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 2.0e-33 146.0 132 57.6
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 2.6e-33 145.6 127 57.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.6e-33 145.6 127 55.1
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 5.9e-33 144.4 128 58.6
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.7e-33 144.1 128 54.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 7.7e-33 144.1 126 56.3
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.0e-32 143.7 127 59.8
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.0e-32 143.7 125 59.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.3e-32 143.3 128 55.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.7e-32 142.9 130 58.5
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 5.0e-32 141.4 129 56.6
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 8.5e-32 140.6 132 57.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.5e-31 139.0 126 57.1
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.5e-31 139.0 130 56.2
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.5e-31 139.0 131 55.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.2e-31 138.3 130 52.3
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 5.5e-31 137.9 125 57.6
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 7.2e-31 137.5 128 54.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 9.4e-31 137.1 132 58.3
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.2e-30 136.7 121 54.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.7e-30 135.6 131 53.4
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 3.6e-30 135.2 125 56.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.6e-30 135.2 124 58.1
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 3.6e-30 135.2 128 53.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 4.7e-30 134.8 134 56.7
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 4.7e-30 134.8 125 56.0
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.1e-30 134.4 129 55.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.9e-30 134.0 128 51.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.4e-29 133.3 132 54.5
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.4e-29 133.3 126 54.8
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.8e-29 132.9 121 54.5
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 1.8e-29 132.9 123 54.5
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.8e-29 132.9 144 51.4
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.3e-29 132.5 128 55.5
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.9e-29 131.7 126 51.6
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 3.9e-29 131.7 123 55.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 5.1e-29 131.3 129 55.8
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 6.7e-29 131.0 126 51.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.5e-28 129.8 129 52.7
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.5e-28 129.8 125 55.2
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.0e-28 129.4 121 52.9
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.6e-28 129.0 122 56.6
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.3e-28 128.6 129 51.9
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 3.3e-28 128.6 127 52.0
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.4e-28 128.3 129 53.5
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.7e-28 127.9 126 50.8
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 5.7e-28 127.9 129 51.9
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 5.7e-28 127.9 124 54.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 7.4e-28 127.5 129 56.6
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 9.7e-28 127.1 132 56.1
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.7e-27 126.3 129 53.5
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.2e-27 125.9 126 50.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.2e-27 125.9 131 55.0
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 3.7e-27 125.2 131 49.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 6.3e-27 124.4 123 53.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.1e-26 123.6 89 64.0
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.1e-26 123.6 133 49.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.4e-26 123.2 142 50.7
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.8e-26 122.9 130 50.0
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 2.4e-26 122.5 129 53.5
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 3.1e-26 122.1 128 47.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.1e-26 122.1 119 52.9
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 3.1e-26 122.1 128 52.3
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 4.1e-26 121.7 122 53.3
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.3e-26 121.3 130 51.5
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 5.3e-26 121.3 121 48.8
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 9.1e-26 120.6 129 51.9
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 9.1e-26 120.6 125 50.4
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 9.1e-26 120.6 123 50.4
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.1e-26 120.6 130 50.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.5e-25 119.8 129 51.9
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.5e-25 119.8 131 50.4
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-24 116.7 131 51.9
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.9e-24 115.5 128 53.1
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 3.8e-24 115.2 132 50.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.5e-23 113.2 133 42.1
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.5e-23 112.5 127 48.8
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 4.2e-23 111.7 121 50.4
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 7.2e-23 110.9 129 47.3
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 9.4e-23 110.5 130 49.2
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.2e-22 110.2 128 44.5
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.6e-22 109.8 128 44.5
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.4e-21 106.7 130 47.7
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.8e-21 106.3 123 47.2
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.8e-21 106.3 133 48.9
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.8e-21 106.3 133 45.1
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.3e-21 105.9 134 47.0
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 2.3e-21 105.9 125 48.8
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 5.2e-21 104.8 130 43.1
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 9.7e-20 100.5 94 52.1
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.3e-19 100.1 130 44.6
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.8e-19 99.0 65 64.6
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.8e-19 99.0 135 42.2
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 4.8e-19 98.2 110 47.3
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 4.8e-19 98.2 128 44.5
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 4.8e-19 98.2 137 43.1
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.4e-18 96.7 130 45.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-17 93.6 126 43.7
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.3e-16 90.1 130 40.8
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.5e-15 85.9 65 53.8
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.2e-15 84.3 116 38.8
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.7e-14 82.4 121 38.0
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 6.8e-13 77.8 66 54.5
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.6e-12 75.9 93 51.6
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 1.7e-11 73.2 120 37.5
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-11 73.2 134 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.1e-10 70.5 129 30.2
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.4e-10 70.1 63 47.6
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.4e-10 70.1 110 40.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.4e-10 70.1 74 43.2
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 3.1e-10 68.9 114 36.0
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 7.0e-10 67.8 75 49.3
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.1e-10 67.4 46 60.9
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.5e-09 65.5 68 47.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.2e-08 62.8 49 55.1
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.0e-08 61.6 127 35.4
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.0e-08 61.6 90 41.1
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 8.5e-08 60.8 60 43.3
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.9e-07 59.7 126 32.5
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 7.2e-07 57.8 141 31.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 9.4e-07 57.4 98 38.8


User provided reference genes

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