Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 0.0e+00 1537.7 828 100.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 0.0e+00 1320.8 828 85.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 0.0e+00 1284.2 826 81.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 0.0e+00 1279.6 826 82.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.4e-300 1035.4 831 68.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 6.6e-295 1017.3 835 66.9
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.5e-294 1015.4 838 67.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 7.3e-294 1013.8 835 66.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.3e-293 1013.1 836 70.8
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.8e-293 1011.9 839 67.9
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.0e-292 1008.1 838 69.6
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.3e-292 1007.7 836 66.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.2e-290 1002.3 845 67.1
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.9e-289 999.2 840 66.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.6e-288 994.6 834 64.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.8e-287 992.6 837 66.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.0e-287 991.9 828 66.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.9e-287 991.5 836 66.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 6.7e-287 990.7 838 65.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.1e-286 989.9 840 66.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 4.3e-286 988.0 836 65.4
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 9.6e-286 986.9 838 65.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 6.2e-285 984.2 839 65.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 8.1e-285 983.8 839 65.4
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.1e-284 983.4 840 66.7
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.0e-284 981.5 839 66.4
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 5.3e-284 981.1 837 65.4
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.2e-283 979.9 834 64.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.2e-282 975.7 848 64.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.4e-281 972.2 834 63.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.2e-281 971.8 837 64.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.2e-281 971.5 837 64.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 7.1e-281 970.7 834 67.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 9.3e-281 970.3 829 66.0
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.6e-280 969.5 835 65.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.6e-280 968.0 839 65.1
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.8e-279 966.1 828 64.7
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.5e-278 962.2 835 63.7
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.5e-278 962.2 838 65.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.2e-275 953.4 842 64.8
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.0e-274 950.3 837 63.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.9e-271 938.3 834 65.7
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.3e-270 935.3 848 64.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.3e-270 934.9 828 63.3
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.7e-270 933.7 834 66.7
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.3e-268 927.9 838 61.7
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.3e-266 923.3 842 61.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.1e-265 920.2 834 61.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.4e-265 919.8 844 61.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-263 911.4 839 60.5
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 8.8e-263 910.6 840 61.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.9e-262 909.4 838 61.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.9e-262 909.4 829 60.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.4e-260 903.3 825 61.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 3.1e-260 902.1 836 61.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 5.3e-260 901.4 836 60.8
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.4e-257 893.3 837 60.6
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 9.4e-257 890.6 839 60.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 9.4e-257 890.6 835 61.8
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 7.9e-256 887.5 826 60.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 7.9e-256 887.5 822 62.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.1e-255 884.8 836 63.8
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.7e-255 884.4 830 60.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.3e-254 882.1 832 62.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.7e-254 881.3 834 59.4
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-250 869.4 844 58.6
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.1e-248 861.3 813 61.0
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.3e-247 859.4 842 59.3
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 3.9e-247 858.6 842 59.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 2.6e-246 855.9 862 58.9
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.4e-244 850.1 837 59.5
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.4e-244 849.4 833 59.2
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.3e-244 848.2 822 60.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-243 846.3 828 60.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.0e-243 846.3 828 60.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.6e-243 845.9 814 60.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.6e-240 836.6 859 57.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.1e-240 836.3 844 56.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.0e-239 832.0 857 56.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 5.2e-239 831.6 828 59.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 5.2e-239 831.6 828 59.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.4e-236 822.8 921 53.9
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 4.1e-236 822.0 837 58.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.6e-235 820.1 871 56.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 7.7e-235 817.8 842 55.3
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.5e-233 812.8 840 56.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.5e-230 803.5 779 58.7
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.5e-230 801.2 835 56.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.3e-229 798.1 825 57.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.1e-225 787.3 842 54.9
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-218 763.8 832 54.6
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.1e-215 752.7 833 55.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.0e-215 752.3 843 52.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 5.8e-214 748.4 672 63.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.1e-212 744.2 800 53.1
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 3.2e-212 742.7 683 62.4
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.3e-210 736.5 831 53.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.5e-206 723.8 828 51.4
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 8.1e-200 701.4 854 49.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.0e-195 685.3 617 63.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-184 651.0 553 63.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.3e-162 577.0 606 55.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.3e-159 565.8 606 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.0e-158 563.9 866 40.2
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.2e-141 507.3 453 61.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 5.5e-140 502.7 374 70.1
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 7.2e-140 502.3 874 38.9
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 7.9e-139 498.8 824 38.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.2e-136 490.7 806 40.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.3e-129 466.8 384 68.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-124 451.8 487 54.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.1e-111 408.7 449 52.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.7e-110 404.1 451 54.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.2e-105 388.7 940 31.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-95 355.1 310 61.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.6e-91 341.7 291 63.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-87 328.2 439 45.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.0e-85 320.9 283 66.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.6e-84 316.6 335 51.9
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.3e-82 311.2 238 72.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 6.8e-82 309.7 242 71.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 8.9e-82 309.3 327 56.6
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.2e-71 274.2 199 69.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 4.8e-67 260.4 879 29.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.2e-64 251.5 266 60.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 4.9e-64 250.4 228 57.5
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 4.0e-58 230.7 195 62.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.4e-55 222.2 153 69.9
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.7e-54 218.0 215 57.2
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-46 192.6 181 59.7
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.2e-39 167.9 214 51.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 7.4e-36 156.8 169 53.8
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-35 155.2 142 60.6
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-35 154.8 150 55.3
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.1e-34 151.4 154 56.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 5.3e-34 150.6 595 27.6
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.0e-29 136.3 106 67.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.3e-28 131.3 105 63.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 7.4e-28 130.2 273 40.7
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.8e-27 128.3 512 24.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.8e-26 125.6 728 23.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.0e-25 122.1 275 38.9
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.6e-25 121.7 73 71.2
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.5e-25 120.9 173 40.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-24 118.6 282 37.9
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.7e-19 101.3 118 50.0
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.7e-16 92.4 175 43.4
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.5e-16 90.5 76 63.2
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.5e-15 88.6 94 53.2
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 4.2e-15 87.8 196 40.8
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-14 86.3 96 56.2
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.1e-14 85.5 199 40.2
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.4e-12 77.8 57 61.4
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.3e-11 73.9 71 53.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.1e-10 73.2 65 56.9
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 6.5e-08 63.9 56 55.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 6.5e-08 63.9 56 55.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.9e-07 62.4 57 52.6
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.5e-07 62.0 56 51.8


User provided reference genes

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