Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 2.9e-52 208.4 113 100.0
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.8e-33 143.7 111 68.5
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.0e-25 118.2 114 63.2
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 2.0e-24 115.9 112 59.8
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.8e-16 87.8 114 45.6
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.7e-13 79.0 106 47.2
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.5e-13 78.6 102 46.1
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.5e-13 78.6 106 46.2
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.0e-12 77.0 114 44.7
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 1.3e-12 76.6 106 47.2
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.3e-12 75.9 61 60.7
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.9e-12 75.1 121 41.3
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.9e-12 75.1 131 40.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 8.6e-12 73.9 118 41.5
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 8.6e-12 73.9 67 61.2
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 8.6e-12 73.9 67 61.2
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.9e-11 72.8 104 48.1
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.5e-11 72.4 61 59.0
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.5e-11 72.4 61 59.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.3e-11 72.0 110 43.6
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.3e-11 71.6 119 39.5
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.3e-11 71.6 113 39.8
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 5.6e-11 71.2 115 43.5
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.3e-11 70.9 119 38.7
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.5e-11 70.5 119 38.7
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.2e-10 70.1 121 38.0
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.2e-10 70.1 64 56.2
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.6e-10 69.7 112 47.3
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.6e-10 69.7 61 54.1
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-10 69.7 60 58.3
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-10 69.7 60 58.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 2.1e-10 69.3 120 40.8
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.8e-10 68.9 62 54.8
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.7e-10 68.2 111 45.0
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.7e-10 68.2 131 34.4
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.1e-10 67.4 62 53.2
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.1e-10 67.4 110 38.2
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.1e-10 67.4 61 57.4
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.1e-09 67.0 69 42.0
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 1.4e-09 66.6 59 50.8
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.4e-09 66.6 59 52.5
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.8e-09 66.2 63 54.0
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.8e-09 66.2 62 56.5
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.8e-09 66.2 124 39.5
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.8e-09 66.2 66 48.5
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 2.3e-09 65.9 60 55.0
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 3.1e-09 65.5 59 57.6
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 3.1e-09 65.5 114 40.4
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.0e-09 65.1 61 50.8
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 4.0e-09 65.1 108 44.4
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.0e-09 65.1 60 55.0
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 4.0e-09 65.1 63 50.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 5.2e-09 64.7 98 42.9
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 5.2e-09 64.7 64 51.6
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.8e-09 64.3 59 47.5
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.8e-09 64.3 59 47.5
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 8.9e-09 63.9 104 42.3
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 8.9e-09 63.9 121 37.2
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.2e-08 63.5 62 53.2
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.2e-08 63.5 60 53.3
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.5e-08 63.2 59 50.8
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-08 62.8 59 54.2
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 2.0e-08 62.8 58 53.4
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.0e-08 62.8 62 51.6
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.0e-08 62.8 60 48.3
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 2.0e-08 62.8 49 63.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 2.6e-08 62.4 63 52.4
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.6e-08 62.4 58 56.9
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 2.6e-08 62.4 98 35.7
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 2.6e-08 62.4 103 41.7
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 2.6e-08 62.4 113 38.1
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.6e-08 62.4 60 53.3
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-08 62.4 119 42.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-08 62.4 119 42.0
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.6e-08 62.4 60 53.3
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.4e-08 62.0 85 38.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 3.4e-08 62.0 61 55.7
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.4e-08 62.0 107 38.3
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 4.4e-08 61.6 113 38.1
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 4.4e-08 61.6 58 51.7
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 4.4e-08 61.6 60 55.0
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 5.8e-08 61.2 58 55.2
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.8e-08 61.2 59 45.8
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 7.5e-08 60.8 58 56.9
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.5e-08 60.8 58 51.7
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.5e-08 60.8 58 51.7
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 7.5e-08 60.8 58 51.7
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 7.5e-08 60.8 56 53.6
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 7.5e-08 60.8 59 54.2
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 7.5e-08 60.8 77 39.0
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 7.5e-08 60.8 107 37.4
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 9.9e-08 60.5 124 33.9
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 9.9e-08 60.5 124 33.9
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 9.9e-08 60.5 80 37.5
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.9e-08 60.5 59 45.8
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 9.9e-08 60.5 59 50.8
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 9.9e-08 60.5 57 57.9
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 9.9e-08 60.5 112 36.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 9.9e-08 60.5 117 39.3
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 9.9e-08 60.5 125 35.2
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 9.9e-08 60.5 119 37.8
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 1.3e-07 60.1 69 50.7
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.3e-07 60.1 115 40.0
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.3e-07 60.1 118 31.4
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.3e-07 60.1 118 36.4
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.3e-07 60.1 113 36.3
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.3e-07 60.1 67 44.8
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.7e-07 59.7 113 38.1
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.7e-07 59.7 122 35.2
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 1.7e-07 59.7 72 41.7
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 1.7e-07 59.7 72 41.7
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-07 59.7 58 44.8
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.7e-07 59.7 72 48.6
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.7e-07 59.7 60 51.7
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.2e-07 59.3 57 52.6
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.2e-07 59.3 58 58.6
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 2.2e-07 59.3 77 37.7
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.2e-07 59.3 49 61.2
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.2e-07 59.3 58 44.8
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 3.7e-07 58.5 52 61.5
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 3.7e-07 58.5 77 36.4
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 3.7e-07 58.5 77 36.4
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 3.7e-07 58.5 49 59.2
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 3.7e-07 58.5 147 31.3
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 3.7e-07 58.5 106 38.7
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.7e-07 58.5 59 52.5
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 4.9e-07 58.2 58 53.4
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 4.9e-07 58.2 115 36.5
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 4.9e-07 58.2 52 55.8
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 4.9e-07 58.2 44 61.4
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.4e-07 57.8 56 51.8
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 6.4e-07 57.8 79 41.8
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.4e-07 57.8 50 54.0
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 6.4e-07 57.8 50 54.0
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 6.4e-07 57.8 76 43.4
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 8.3e-07 57.4 115 40.0
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.3e-07 57.4 64 48.4
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 8.3e-07 57.4 56 51.8
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 8.3e-07 57.4 75 40.0
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.1e-06 57.0 83 39.8
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 1.1e-06 57.0 59 52.5
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.4e-06 56.6 111 37.8
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.4e-06 56.6 58 53.4
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.4e-06 56.6 120 34.2
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.4e-06 56.6 108 36.1
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 1.9e-06 56.2 62 56.5
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.9e-06 56.2 110 33.6
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 2.4e-06 55.8 79 40.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 2.4e-06 55.8 59 52.5
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 3.2e-06 55.5 41 65.9
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 3.2e-06 55.5 41 65.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.2e-06 55.5 63 47.6
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.2e-06 55.5 63 47.6
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 3.2e-06 55.5 70 51.4
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.2e-06 55.5 109 39.4
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 4.1e-06 55.1 111 36.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.1e-06 55.1 62 45.2
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 4.1e-06 55.1 117 33.3
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 5.4e-06 54.7 62 48.4
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 5.4e-06 54.7 75 36.0
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 5.4e-06 54.7 65 46.2
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.4e-06 54.7 117 31.6
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 5.4e-06 54.7 66 48.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.4e-06 54.7 50 54.0
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 5.4e-06 54.7 107 40.2
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 7.1e-06 54.3 52 57.7
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 7.1e-06 54.3 65 46.2
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 7.1e-06 54.3 59 50.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 9.2e-06 53.9 50 54.0
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 9.2e-06 53.9 63 46.0
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 9.2e-06 53.9 56 51.8
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.2e-06 53.9 59 54.2


User provided reference genes

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