Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.5e-256 889.0 458 100.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 9.2e-230 800.0 458 88.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 6.6e-228 793.9 500 83.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 5.7e-179 631.3 458 69.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.2e-178 629.4 454 69.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 8.2e-178 627.5 458 70.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.4e-177 626.7 469 67.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.4e-177 626.7 449 71.7
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.4e-176 622.1 452 68.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.1e-174 617.1 452 68.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-174 617.1 440 72.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 9.4e-174 614.0 458 69.0
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 9.4e-174 614.0 449 69.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.2e-173 613.6 449 67.9
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.6e-173 613.2 449 67.9
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.6e-173 612.1 452 68.6
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.1e-173 611.3 452 68.4
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.8e-172 609.8 446 69.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.8e-172 609.8 446 69.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.7e-172 607.8 458 67.7
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-171 606.7 440 69.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.7e-170 603.2 448 69.2
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.7e-170 602.1 449 69.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.8e-170 601.7 444 69.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.3e-170 601.3 455 67.7
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.1e-169 600.5 447 68.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.1e-169 600.5 448 68.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.4e-169 600.1 448 68.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.5e-168 596.7 447 68.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.6e-168 595.9 447 68.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.6e-168 595.9 448 68.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.6e-168 595.9 448 69.0
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.5e-168 595.1 452 67.0
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 5.9e-168 594.7 456 67.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 5.9e-168 594.7 460 66.3
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.3e-167 593.6 456 66.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.3e-167 593.6 448 67.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.7e-167 593.2 444 69.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.2e-167 592.8 456 66.7
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.9e-167 592.4 446 66.6
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.9e-167 592.4 436 70.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.9e-167 592.4 449 67.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.9e-167 592.4 448 66.7
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 8.5e-167 590.9 450 66.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-166 590.1 451 66.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.9e-166 589.7 448 66.1
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.2e-166 588.6 448 66.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.5e-166 588.2 452 67.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 7.2e-166 587.8 448 66.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 7.2e-166 587.8 457 66.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 7.2e-166 587.8 444 68.7
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 7.2e-166 587.8 427 69.6
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 7.2e-166 587.8 463 66.3
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.6e-165 586.6 450 66.7
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-165 586.3 448 66.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 2.1e-165 586.3 447 65.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.7e-165 585.9 457 67.8
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.7e-165 585.9 476 65.3
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.7e-165 585.9 402 73.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 3.6e-165 585.5 476 65.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.6e-165 585.5 447 65.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.6e-165 585.5 447 65.3
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 3.6e-165 585.5 448 66.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.7e-165 585.1 447 65.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 6.1e-165 584.7 448 66.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.9e-165 584.3 447 66.9
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.0e-164 583.9 451 65.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.3e-164 582.8 446 64.8
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.0e-164 582.4 451 65.9
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-164 582.0 447 64.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 8.8e-164 580.9 447 67.1
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 8.8e-164 580.9 448 65.0
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.1e-163 580.5 452 65.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-163 580.5 447 64.9
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.3e-163 578.9 447 64.7
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.3e-163 578.9 450 65.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.4e-163 578.6 444 65.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.4e-163 578.6 446 64.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.7e-163 578.2 447 64.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.3e-162 577.0 459 65.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.7e-162 575.5 450 64.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.7e-162 575.5 450 64.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 3.7e-162 575.5 389 73.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-161 573.5 418 72.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.8e-161 573.2 440 64.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 3.1e-161 572.4 447 64.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.1e-161 572.4 440 67.3
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 7.0e-161 571.2 474 63.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.2e-160 570.5 440 67.0
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.6e-160 570.1 446 66.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-160 569.7 474 61.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.0e-160 569.7 449 64.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.5e-158 562.8 473 60.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.2e-158 562.4 456 64.3
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 7.2e-158 561.2 447 64.9
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 6.1e-157 558.1 456 62.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.0e-156 557.4 455 64.0
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-155 553.9 469 61.6
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.5e-155 553.5 467 63.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.6e-155 552.7 550 54.9
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 6.3e-154 548.1 444 64.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.4e-153 547.0 448 63.6
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.0e-152 543.1 455 63.5
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 7.7e-152 541.2 402 68.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.2e-151 539.7 386 69.7
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.1e-149 531.6 445 62.9
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.1e-145 520.8 456 61.6
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.5e-142 510.4 454 58.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.2e-142 509.2 439 58.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-139 500.7 446 57.4
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.0e-139 500.0 385 66.2
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.2e-138 496.5 478 55.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.7e-135 486.9 461 54.9
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.6e-135 485.0 442 55.9
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.3e-132 476.5 389 62.5
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.0e-132 475.7 410 60.2
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.0e-127 459.5 432 56.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.6e-127 458.0 351 66.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 5.2e-124 448.7 444 53.4
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.3e-119 434.1 456 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.9e-118 430.3 445 51.7
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.8e-116 423.7 446 48.9
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.0e-116 422.5 446 49.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.2e-115 421.0 446 48.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 9.9e-115 417.9 275 73.8
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 9.9e-115 417.9 389 55.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.7e-114 417.2 441 55.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 5.6e-110 402.1 445 47.4
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 6.2e-109 398.7 318 65.1
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.3e-103 380.9 458 51.3
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.4e-99 366.3 442 45.9
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.9e-94 350.5 383 50.9
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-93 347.4 252 68.7
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.4e-91 339.7 274 62.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.9e-90 336.7 294 60.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 7.9e-72 275.4 315 51.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-70 271.6 314 47.8
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 8.2e-69 265.4 188 69.1
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.5e-54 218.0 121 90.1
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.3e-53 212.6 173 65.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.7e-51 205.7 129 72.9
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-49 201.8 158 66.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.7e-48 196.4 158 62.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.1e-41 175.3 182 51.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.5e-41 174.9 125 68.0
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-31 141.4 94 74.5
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.2e-30 138.7 135 60.7
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.5e-25 121.7 119 58.0
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 8.9e-23 112.5 77 66.2
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.3e-21 108.6 123 51.2
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.7e-18 98.2 99 50.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.5e-17 94.4 72 66.7
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.1e-12 79.0 57 66.7
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 9.2e-12 75.9 101 48.5
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 6.0e-11 73.2 43 76.7
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.9e-10 70.5 63 55.6
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.6e-09 66.6 43 72.1


User provided reference genes

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