Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009465 Sechium edule HOM05D021754 ORTHO05D000721 9.5e-168 593.6 331 100.0
ClCG03G001150 Citrullus lanatus HOM05D021754 ORTHO05D000721 3.1e-118 429.1 350 77.4
MELO3C020595.2 Cucumis melo HOM05D021754 ORTHO05D000721 2.4e-115 419.5 350 75.7
CsaV3_1G034640 Cucumis sativus L. HOM05D021754 ORTHO05D000721 1.5e-101 373.6 327 73.7
CsaV3_1G035740 Cucumis sativus L. HOM05D021754 ORTHO05D000721 1.5e-101 373.6 327 73.7
Sed0001017 Sechium edule HOM05D021754 ORTHO05D000721 1.7e-79 300.4 266 72.9
Cfa011590 Carpinus fangiana HOM05D001128 ORTHO05D000721 8.4e-23 112.1 352 36.4
CiPaw.13G086900 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.5e-21 106.7 345 35.7
Duzib168G0052 Durio zibethinus HOM05D001128 ORTHO05D000721 1.0e-20 105.1 356 30.9
Haze_24208 Corylus avellana HOM05D001128 ORTHO05D000721 1.5e-19 101.3 363 36.4
Atru.chr3.4033 Acer truncatum HOM05D001128 ORTHO05D000721 7.3e-19 99.0 296 35.8
Potri.009G038600 Populus trichocarpa HOM05D001128 ORTHO05D000721 2.8e-18 97.1 385 30.1
Thecc.09G311600 Theobroma cacao HOM05D001128 ORTHO05D000721 3.6e-18 96.7 386 29.3
Gohir.D05G092700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 3.1e-17 93.6 354 30.5
Gohir.A05G091900 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.0e-17 93.2 319 32.3
Manes.01G167300 Manihot esculenta HOM05D001128 ORTHO05D000721 4.0e-17 93.2 353 32.0
Gorai.009G095300 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.5e-16 91.3 355 30.1
Manes.02G125700 Manihot esculenta HOM05D001128 ORTHO05D000721 1.5e-16 91.3 367 30.5
QL01p028290 Quercus lobata HOM05D001128 ORTHO05D000721 1.5e-16 91.3 349 35.5
Sabra09G0027500 Salix brachista HOM05D001128 ORTHO05D000721 1.5e-16 91.3 401 28.7
FAN16G1449 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.4e-16 89.7 349 31.2
TWI75G1051 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 7.6e-16 89.0 310 30.6
FAN21G1564 Fragaria x ananassa HOM05D001128 ORTHO05D000721 9.9e-16 88.6 343 30.9
FvH4_3g37230 Fragaria vesca HOM05D001128 ORTHO05D000721 1.7e-15 87.8 349 30.9
Carub.0008s1989 Capsella rubella HOM05D009319 ORTHO05D000721 2.2e-15 87.4 313 29.4
RcHm_v2.0_Chr5g0066981 Rosa chinensis HOM05D001128 ORTHO05D000721 3.8e-15 86.7 346 30.3
FAN25G3787 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.9e-15 86.3 349 30.9
Rhsim13G0075900 Rhododendron simsii HOM05D001128 ORTHO05D000721 1.1e-14 85.1 310 31.9
MD03G1082700 Malus domestica HOM05D001128 ORTHO05D000721 4.2e-14 83.2 378 30.2
Medtr2g097800 Medicago truncatula HOM05D001128 ORTHO05D000721 1.2e-13 81.6 309 28.8
Lalb_Chr14g0372071 Lupinus albus HOM05D001128 ORTHO05D000721 6.0e-13 79.3 327 33.3
Eucgr.J01995 Eucalyptus grandis HOM05D001128 ORTHO05D000721 7.8e-13 79.0 336 30.4
arahy.Tifrunner.gnm1.ann1.BMML80 Arachis hypogaea HOM05D001128 ORTHO05D000721 1.3e-12 78.2 272 30.5
BcaC03g14030 Brassica carinata HOM05D009319 ORTHO05D000721 3.0e-12 77.0 336 28.3
BolC2t07368H Brassica oleracea HOM05D009319 ORTHO05D000721 3.0e-12 77.0 336 28.3
Sp6g20920 Schrenkiella parvula HOM05D009319 ORTHO05D000721 3.9e-12 76.6 324 29.3
Prupe.6G067000 Prunus persica HOM05D001128 ORTHO05D000721 5.1e-12 76.3 333 30.6
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 6.6e-12 75.9 373 29.2
CSS0032417 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 8.7e-12 75.5 315 29.8
C02p12700 Brassica napus HOM05D009319 ORTHO05D000721 1.1e-11 75.1 336 28.0
TWI79G1361 Tripterygium wilfordii HOM05D001128 ORTHO05D000721 1.1e-11 75.1 317 30.0
A03p11830 Brassica napus HOM05D009319 ORTHO05D000721 1.5e-11 74.7 326 29.1
TPR.G6832 Trifolium pratense HOM05D001128 ORTHO05D000721 1.5e-11 74.7 301 29.9
CiPaw.14G063600 Carya illinoinensis HOM05D001128 ORTHO05D000721 3.3e-11 73.6 114 40.4
PGSC0003DMG400030336 Solanum tuberosum HOM05D001128 ORTHO05D000721 3.3e-11 73.6 322 28.3
FAN11G2007 Fragaria x ananassa HOM05D001128 ORTHO05D000721 4.3e-11 73.2 387 28.2
BraA02t05807Z Brassica rapa HOM05D009319 ORTHO05D000721 7.3e-11 72.4 336 27.7
C03p13890 Brassica napus HOM05D009319 ORTHO05D000721 9.6e-11 72.0 323 29.1
RcHm_v2.0_Chr1g0368901 Rosa chinensis HOM05D001128 ORTHO05D000721 9.6e-11 72.0 379 27.7
vmacro03017 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 9.6e-11 72.0 351 28.8
MD11G1090800 Malus domestica HOM05D001128 ORTHO05D000721 1.3e-10 71.6 376 27.4
arahy.Tifrunner.gnm1.ann1.E0Q1QR Arachis hypogaea HOM05D001128 ORTHO05D000721 2.1e-10 70.9 287 31.7
BcaB08g36278 Brassica carinata HOM05D009319 ORTHO05D000721 2.1e-10 70.9 338 29.6
Cpa.g.sc81.51 Carica papaya HOM05D001128 ORTHO05D000721 2.1e-10 70.9 351 28.8
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 3.6e-10 70.1 373 26.8
AT5G59050 Arabidopsis thaliana HOM05D009319 ORTHO05D000721 8.1e-10 68.9 325 27.7
Lj3g0022973 Lotus japonicus HOM05D001128 ORTHO05D000721 8.1e-10 68.9 334 29.9
BcaC04g19808 Brassica carinata HOM05D009319 ORTHO05D000721 1.1e-09 68.6 346 27.7
Gohir.D04G065500 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-09 68.6 325 26.8
Gohir.D10G238700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 1.1e-09 68.6 343 27.1
BraA03t10494Z Brassica rapa HOM05D009319 ORTHO05D000721 1.4e-09 68.2 322 28.9
Thhalv10014238m.g Eutrema salsugineum HOM05D009319 ORTHO05D000721 1.4e-09 68.2 228 31.1
Gorai.011G274600 Gossypium raimondii HOM05D001128 ORTHO05D000721 1.4e-09 68.2 349 26.9
CAN.G394.85 Capsicum annuum HOM05D001128 ORTHO05D000721 1.8e-09 67.8 344 27.0
Glyma.13G339500 Glycine max HOM05D001128 ORTHO05D000721 1.8e-09 67.8 299 31.4
Nitab4.5_0000652g0060 Nicotiana tabacum HOM05D001128 ORTHO05D000721 1.8e-09 67.8 388 26.5
Psat5g286040 Pisum sativum HOM05D001128 ORTHO05D000721 1.8e-09 67.8 285 29.5
Prupe.2G243200 Prunus persica HOM05D001128 ORTHO05D000721 2.4e-09 67.4 380 25.5
C09p51480 Brassica napus HOM05D009319 ORTHO05D000721 3.1e-09 67.0 346 27.5
BolC9t58007H Brassica oleracea HOM05D009319 ORTHO05D000721 3.1e-09 67.0 346 27.5
Dinv17068 Davidia involucrata HOM05D001128 ORTHO05D000721 3.1e-09 67.0 318 27.4
Duzib128G2050 Durio zibethinus HOM05D001128 ORTHO05D000721 3.1e-09 67.0 369 26.8
CARHR285570 Cardamine hirsuta HOM05D009319 ORTHO05D000721 4.0e-09 66.6 245 29.0
Glyma.15G034900 Glycine max HOM05D001128 ORTHO05D000721 4.0e-09 66.6 123 43.1
Gohir.A05G346700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 4.0e-09 66.6 323 29.7
Oeu018335.1 Olea europaea HOM05D001128 ORTHO05D000721 5.3e-09 66.2 357 29.4
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.3e-09 66.2 366 29.0
FAN06G2816 Fragaria x ananassa HOM05D001128 ORTHO05D000721 6.9e-09 65.9 356 28.9
Gohir.A10G226400 Gossypium hirsutum HOM05D001128 ORTHO05D000721 6.9e-09 65.9 349 26.6
Gorai.012G073700 Gossypium raimondii HOM05D001128 ORTHO05D000721 9.0e-09 65.5 325 26.8
Lalb_Chr19g0138041 Lupinus albus HOM05D001128 ORTHO05D000721 9.0e-09 65.5 132 40.2
Dinv43012 Davidia involucrata HOM05D001128 ORTHO05D000721 1.2e-08 65.1 319 26.6
Dinv43085 Davidia involucrata HOM05D001128 ORTHO05D000721 1.2e-08 65.1 319 26.6
COL.COLO4_25581 Corchorus olitorius HOM05D001128 ORTHO05D000721 1.5e-08 64.7 364 26.9
Duzib170G1159 Durio zibethinus HOM05D001128 ORTHO05D000721 1.5e-08 64.7 347 27.1
FvH4_7g23630 Fragaria vesca HOM05D001128 ORTHO05D000721 1.5e-08 64.7 410 28.3
FAN06G3577 Fragaria x ananassa HOM05D001128 ORTHO05D000721 1.5e-08 64.7 356 28.9
PGR119G0644 Punica granatum HOM05D001128 ORTHO05D000721 1.5e-08 64.7 317 29.3
THA.LOC104810743 Tarenaya hassleriana HOM05D009319 ORTHO05D000721 2.0e-08 64.3 318 28.0
BolC3t13836H Brassica oleracea HOM05D009319 ORTHO05D000721 2.6e-08 63.9 322 28.3
Cc01_g13540 Coffea canephora HOM05D001128 ORTHO05D000721 3.4e-08 63.5 357 25.8
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 3.4e-08 63.5 396 28.5
Lsat_1_v5_gn_8_80861 Lactuca sativa HOM05D001128 ORTHO05D000721 4.5e-08 63.2 355 28.2
Thecc.10G030500 Theobroma cacao HOM05D001128 ORTHO05D000721 4.5e-08 63.2 374 26.2
Ciclev10029021m.g Citrus clementina HOM05D001128 ORTHO05D000721 5.8e-08 62.8 336 26.8
FAN01G1897 Fragaria x ananassa HOM05D001128 ORTHO05D000721 5.8e-08 62.8 410 28.3
Glyma.11G134800 Glycine max HOM05D001128 ORTHO05D000721 5.8e-08 62.8 109 44.0
Gohir.A03G046700 Gossypium hirsutum HOM05D001128 ORTHO05D000721 5.8e-08 62.8 319 27.9
QL08p062120 Quercus lobata HOM05D001128 ORTHO05D000721 5.8e-08 62.8 381 25.5
TAR633G0212 Trochodendron aralioides HOM05D001128 ORTHO05D000721 5.8e-08 62.8 353 29.2
BcaB01g04601 Brassica carinata HOM05D009319 ORTHO05D000721 7.6e-08 62.4 275 28.7
Peaxi162Scf00481g00624 Petunia axillaris HOM05D001128 ORTHO05D000721 7.6e-08 62.4 333 26.4
Migut.N00909 Erythranthe guttata HOM05D001128 ORTHO05D000721 9.9e-08 62.0 150 36.0
CiPaw.02G188400 Carya illinoinensis HOM05D001128 ORTHO05D000721 1.7e-07 61.2 413 26.2
Prupe.6G265300 Prunus persica HOM05D001128 ORTHO05D000721 1.7e-07 61.2 367 26.2
Solyc06g076490.3 Solanum lycopersicum HOM05D001128 ORTHO05D000721 1.7e-07 61.2 334 26.6
PGR044G0160 Punica granatum HOM05D001128 ORTHO05D000721 2.2e-07 60.8 127 37.0
Gorai.006G178800 Gossypium raimondii HOM05D001128 ORTHO05D000721 2.9e-07 60.5 345 28.1
Duzib106G0526 Durio zibethinus HOM05D001128 ORTHO05D000721 3.8e-07 60.1 368 25.3
MSTRG.5621 Avicennia marina HOM05D001128 ORTHO05D000721 4.9e-07 59.7 412 27.9
Glyma.11G225400 Glycine max HOM05D001128 ORTHO05D000721 4.9e-07 59.7 353 26.3
CSS0030928 Camellia sinensis var. sinensis HOM05D001128 ORTHO05D000721 6.4e-07 59.3 396 27.8
Gorai.003G127200 Gossypium raimondii HOM05D001128 ORTHO05D000721 6.4e-07 59.3 307 27.0
Sopen06g032900 Solanum pennellii HOM05D001128 ORTHO05D000721 6.4e-07 59.3 376 27.4
Sopen10g034430 Solanum pennellii HOM05D001128 ORTHO05D000721 6.4e-07 59.3 360 25.8
arahy.Tifrunner.gnm1.ann1.N2YSCM Arachis hypogaea HOM05D001128 ORTHO05D000721 1.1e-06 58.5 114 41.2
Ca_01300_v3 Cicer arietinum L. HOM05D001128 ORTHO05D000721 1.1e-06 58.5 269 28.3
vmacro20201 Vaccinium macrocarpon HOM05D001128 ORTHO05D000721 1.1e-06 58.5 329 28.0
VMungo1080G0292 Vigna mungo HOM05D001128 ORTHO05D000721 1.4e-06 58.2 289 29.1
Cfa001394 Carpinus fangiana HOM05D001128 ORTHO05D000721 1.9e-06 57.8 383 26.9
Oeu009915.1 Olea europaea HOM05D001128 ORTHO05D000721 1.9e-06 57.8 418 27.8
HanXRQChr08g0212731 Helianthus annuus HOM05D001128 ORTHO05D000721 2.4e-06 57.4 330 25.5
Phvul.L008643 Phaseolus vulgaris HOM05D001128 ORTHO05D000721 3.2e-06 57.0 199 32.7
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 3.2e-06 57.0 380 26.1
A10p16430 Brassica napus HOM05D009319 ORTHO05D000721 4.2e-06 56.6 321 27.1
BraA10t43727Z Brassica rapa HOM05D009319 ORTHO05D000721 4.2e-06 56.6 321 27.1
Oeu001830.1 Olea europaea HOM05D001128 ORTHO05D000721 4.2e-06 56.6 381 26.8
Actinidia29161 Actinidia chinensis HOM05D001128 ORTHO05D000721 5.4e-06 56.2 133 38.3
Haze_17155 Corylus avellana HOM05D001128 ORTHO05D000721 5.4e-06 56.2 374 25.9
Duzib128G0075 Durio zibethinus HOM05D001128 ORTHO05D000721 5.4e-06 56.2 371 26.7
SalBow6G5821 Salvia bowleyana HOM05D001128 ORTHO05D000721 5.4e-06 56.2 328 27.4
Sabra10G0150300 Salix brachista HOM05D001128 ORTHO05D000721 7.1e-06 55.8 110 37.3
Solyc10g084970.2 Solanum lycopersicum HOM05D001128 ORTHO05D000721 9.3e-06 55.5 360 26.4


User provided reference genes

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