Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.3e-142 509.6 246 100.0
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 1.5e-106 389.8 263 75.7
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.3e-105 386.7 263 74.1
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 4.3e-101 371.7 263 73.0
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 6.1e-79 298.1 269 59.9
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 7.0e-75 284.6 255 56.9
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 4.5e-74 282.0 265 55.8
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 5.9e-74 281.6 267 56.9
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 2.2e-73 279.6 267 55.4
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 6.5e-73 278.1 267 55.1
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 8.5e-73 277.7 265 55.1
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 1.5e-72 276.9 255 55.3
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 1.9e-72 276.6 266 56.0
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.6e-71 273.5 261 56.3
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.6e-71 273.5 263 54.8
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.7e-71 272.7 259 55.6
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 6.1e-71 271.6 182 69.8
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 6.1e-71 271.6 270 53.3
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.8e-70 270.0 169 74.0
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 2.3e-70 269.6 177 67.8
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.3e-70 269.6 259 54.8
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 3.0e-70 269.2 174 71.8
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 8.8e-70 267.7 177 67.2
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 8.8e-70 267.7 203 65.0
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 1.5e-69 266.9 208 62.0
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 1.5e-69 266.9 259 53.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 2.6e-69 266.2 178 68.5
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 3.4e-69 265.8 165 69.7
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 7.5e-69 264.6 257 52.5
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 9.8e-69 264.2 182 66.5
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 1.3e-68 263.8 166 69.3
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 1.3e-68 263.8 182 67.6
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 1.3e-68 263.8 262 53.1
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 1.7e-68 263.5 179 66.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 2.8e-68 262.7 179 68.7
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 4.9e-68 261.9 266 53.8
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 6.3e-68 261.5 178 66.9
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 6.3e-68 261.5 179 66.5
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 8.3e-68 261.2 177 63.8
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 1.1e-67 260.8 268 50.7
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 1.1e-67 260.8 255 54.5
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 4.1e-67 258.8 255 52.5
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 4.1e-67 258.8 183 66.1
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 5.4e-67 258.5 182 63.2
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 7.0e-67 258.1 187 63.6
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 7.0e-67 258.1 202 61.4
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 9.2e-67 257.7 185 64.3
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-66 257.3 180 65.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 1.6e-66 256.9 181 63.5
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 1.6e-66 256.9 167 68.3
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 1.6e-66 256.9 180 65.6
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 1.6e-66 256.9 180 65.6
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.0e-66 256.5 187 63.6
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 2.0e-66 256.5 257 53.3
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 2.7e-66 256.1 187 62.0
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 2.7e-66 256.1 178 65.7
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 3.5e-66 255.8 180 65.0
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.5e-66 255.8 193 60.6
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 3.5e-66 255.8 182 63.2
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 4.5e-66 255.4 178 64.6
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 4.5e-66 255.4 181 62.4
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 5.9e-66 255.0 182 63.7
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 5.9e-66 255.0 195 60.5
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.0e-65 254.2 178 64.6
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 1.0e-65 254.2 182 64.3
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 1.3e-65 253.8 180 64.4
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.7e-65 253.4 180 63.3
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 2.3e-65 253.1 185 63.2
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 3.8e-65 252.3 255 52.2
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 3.8e-65 252.3 257 51.8
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 5.0e-65 251.9 178 63.5
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 6.6e-65 251.5 184 64.7
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 8.6e-65 251.1 183 62.8
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 1.1e-64 250.8 186 61.8
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 1.5e-64 250.4 182 62.6
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 5.6e-64 248.4 199 58.8
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 5.6e-64 248.4 261 51.0
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 1.2e-63 247.3 183 60.1
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.6e-63 246.9 179 63.1
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 2.1e-63 246.5 247 49.8
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 2.8e-63 246.1 177 62.1
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 6.1e-63 245.0 179 63.1
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 8.0e-63 244.6 261 51.0
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 1.4e-62 243.8 179 63.1
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 1.8e-62 243.4 183 60.7
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 2.3e-62 243.0 179 62.0
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 3.0e-62 242.7 169 65.7
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 4.0e-62 242.3 160 66.2
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 5.2e-62 241.9 257 49.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 2.6e-61 239.6 183 62.8
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 2.6e-61 239.6 167 66.5
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 5.7e-61 238.4 183 60.1
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 6.4e-60 235.0 170 64.7
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 1.1e-59 234.2 179 60.9
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 2.4e-59 233.0 180 60.0
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 1.3e-57 227.3 172 59.3
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.1e-56 224.2 199 55.8
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.5e-56 223.8 199 55.8
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 2.5e-56 223.0 163 64.4
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 1.6e-55 220.3 172 63.4
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 4.7e-55 218.8 153 62.1
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 2.3e-54 216.5 171 59.1
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.2e-53 214.2 140 62.9
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 2.2e-52 209.9 182 58.2
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.4e-51 206.5 163 57.7
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.4e-51 206.5 168 57.7
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 5.4e-51 205.3 168 57.1
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 2.0e-50 203.4 167 56.9
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.3e-49 200.7 159 60.4
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 4.7e-47 192.2 182 53.3
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.7e-44 183.7 139 62.6
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 3.2e-43 179.5 155 56.8
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 4.1e-43 179.1 182 51.1
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 1.2e-42 177.6 162 46.9
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 6.6e-41 171.8 103 70.9
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 1.5e-40 170.6 103 70.9
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 4.3e-40 169.1 102 66.7
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 2.1e-39 166.8 102 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 2.6e-37 159.8 217 39.2
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.0e-29 133.7 73 71.2
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 8.4e-28 128.3 105 57.1
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 1.7e-20 104.0 89 59.6
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.1e-19 101.3 136 41.2
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 2.4e-19 100.1 94 55.3
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 7.1e-19 98.6 111 50.5
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 6.7e-17 92.0 146 34.2
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 3.3e-16 89.7 118 38.1
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 9.6e-16 88.2 118 39.8
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 3.6e-15 86.3 76 52.6
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 4.8e-15 85.9 82 51.2
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 6.2e-15 85.5 117 37.6
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 1.5e-13 80.9 156 35.3
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 3.4e-13 79.7 118 34.7
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 5.8e-13 79.0 120 33.3
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 1.3e-12 77.8 120 33.3
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 1.7e-12 77.4 120 34.2
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 2.2e-12 77.0 120 32.5
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.2e-12 77.0 120 32.5
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.9e-12 76.6 120 32.5
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 3.8e-12 76.3 118 34.7
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.9e-12 75.9 120 32.5
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 4.9e-12 75.9 118 33.9
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 6.4e-12 75.5 118 34.7
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 8.4e-12 75.1 101 40.6
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 1.4e-11 74.3 120 31.7
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 1.9e-11 73.9 118 33.1
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 1.9e-11 73.9 117 35.0
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 1.9e-11 73.9 118 33.1
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 2.4e-11 73.6 122 33.6
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 3.2e-11 73.2 117 32.5
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 3.2e-11 73.2 118 33.9
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 3.2e-11 73.2 118 33.9
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 4.2e-11 72.8 119 31.9
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 4.2e-11 72.8 119 31.9
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 5.5e-11 72.4 118 33.1
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 5.5e-11 72.4 118 33.1
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 5.5e-11 72.4 41 78.0
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 5.5e-11 72.4 117 31.6
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 5.5e-11 72.4 117 32.5
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 7.1e-11 72.0 118 35.6
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 7.1e-11 72.0 118 33.1
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 9.3e-11 71.6 117 31.6
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 9.3e-11 71.6 119 31.9
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 1.2e-10 71.2 117 31.6
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 2.7e-10 70.1 120 30.0
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 4.6e-10 69.3 119 31.1
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 7.9e-10 68.6 117 29.9
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 7.9e-10 68.6 117 31.6
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 3.0e-09 66.6 119 29.4
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 3.9e-09 66.2 116 31.0
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 8.7e-09 65.1 118 29.7
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 1.1e-08 64.7 122 30.3
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 1.5e-08 64.3 55 56.4


User provided reference genes

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