Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 7.1e-234 813.5 402 100.0
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 7.1e-226 786.9 402 95.5
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.6e-225 784.3 411 94.2
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 9.6e-223 776.5 417 91.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 3.8e-219 764.6 401 91.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 91.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.5
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.8
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 89.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 89.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 89.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.5
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.8
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.0
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 89.6
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 89.6
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 89.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.1
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 88.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.1
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.1
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 88.6
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 88.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 89.1
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.6
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.6
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.6
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.1
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 89.1
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.6
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 88.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.8
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 2.6e-212 741.9 429 85.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.1
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 87.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 87.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.6
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 88.1
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 87.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.6
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.1e-209 732.3 416 85.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.6
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.3
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 6.0e-209 730.7 416 85.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.6
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 87.1
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.3
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 86.6
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 87.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.5e-207 726.1 397 86.9
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 85.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 9.6e-207 723.4 401 86.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 87.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.6e-206 722.6 402 85.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.6e-206 722.6 438 81.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 85.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.1e-205 719.9 402 86.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 4.5e-204 714.5 419 84.2
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 85.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.5e-202 707.6 402 83.1
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.7e-201 705.3 400 83.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.0e-200 703.4 441 79.1
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.7e-198 694.9 402 82.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.1e-197 693.3 402 82.8
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 6.9e-197 690.6 402 83.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 7.2e-194 680.6 375 86.7
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.3e-192 676.4 402 82.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 80.3
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 79.9
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.1e-191 673.3 402 80.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.5e-188 662.9 402 79.4
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 3.4e-188 661.8 357 87.4
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 7.2e-186 654.1 361 87.5
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.8e-184 649.4 360 85.0
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 4.8e-182 641.3 401 75.6
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 6.9e-181 637.5 402 77.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.7e-177 625.5 340 88.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 7.9e-177 624.0 402 72.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.3e-175 618.6 402 72.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-174 616.7 403 73.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.8e-174 615.5 403 72.2
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 8.2e-174 614.0 334 88.3
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.7e-171 606.3 402 71.4
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 9.4e-170 600.5 402 74.9
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.6e-164 583.2 402 69.7
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.9e-164 581.3 401 68.3
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.0e-160 568.9 403 67.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 5.5e-154 548.1 419 70.2
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.2e-148 530.4 289 86.9
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 8.9e-144 514.2 403 66.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.9e-138 496.5 402 64.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.1e-128 464.2 259 84.6
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.9e-122 443.4 394 54.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.1e-117 427.6 395 54.9
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.3e-114 415.6 276 75.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.0e-103 380.2 229 79.9
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 7.9e-100 368.2 219 80.8
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-99 367.5 219 80.4
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.0e-99 366.3 219 79.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-84 317.8 300 55.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 8.2e-81 305.1 167 88.6
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.4e-79 299.7 160 89.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 3.1e-56 223.4 116 93.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 4.9e-33 146.4 86 81.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.0e-31 141.0 351 30.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.9e-31 139.4 350 26.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 9.8e-18 95.5 47 93.6
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 6.6e-14 82.8 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 9.5e-13 79.0 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-12 77.8 318 24.2


User provided reference genes

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