Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 0.0e+00 1183.3 597 100.0
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 0.0e+00 1092.8 601 92.7
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 0.0e+00 1085.9 597 92.3
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.4e-288 993.4 598 83.8
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.3e-287 992.6 595 84.2
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.9e-285 983.8 597 84.3
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.3e-284 982.6 601 83.7
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.2e-282 976.1 597 82.7
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.6e-282 975.7 578 84.3
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.6e-282 974.5 597 82.9
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.4e-281 972.6 599 82.6
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.3e-281 971.8 599 82.3
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.3e-281 971.8 588 83.3
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.9e-281 971.1 597 81.6
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 8.8e-281 969.9 597 81.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.0e-280 968.8 598 81.8
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 4.4e-280 967.6 576 84.5
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 9.7e-280 966.5 597 83.1
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.7e-279 965.7 596 81.2
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.7e-279 965.7 597 80.4
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 6.3e-279 963.8 597 82.6
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 6.3e-279 963.8 597 81.4
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 8.2e-279 963.4 579 81.5
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.4e-278 962.6 598 81.4
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.4e-278 961.8 598 81.1
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.1e-278 961.4 602 81.2
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.3e-278 960.7 593 82.8
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.5e-277 959.1 547 86.3
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.5e-277 959.1 598 81.4
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 2.0e-277 958.7 597 80.2
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.6e-277 958.4 591 81.9
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 3.4e-277 958.0 580 82.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 4.5e-277 957.6 591 81.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.9e-277 957.2 557 84.6
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 5.9e-277 957.2 595 80.3
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.7e-277 956.8 593 82.3
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 7.7e-277 956.8 588 81.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.0e-276 956.4 619 79.3
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.7e-276 955.7 590 82.0
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.0e-276 954.1 599 80.5
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.5e-276 953.7 599 81.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.1e-275 953.0 595 80.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.5e-275 951.8 595 80.5
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 3.2e-275 951.4 572 83.6
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 7.2e-275 950.3 612 80.1
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 7.2e-275 950.3 591 81.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 9.4e-275 949.9 595 79.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.2e-274 949.5 587 82.1
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.2e-274 949.5 599 81.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 2.1e-274 948.7 563 84.2
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 2.7e-274 948.3 521 91.9
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 7.9e-274 946.8 596 79.9
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 7.9e-274 946.8 574 82.6
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.0e-273 946.4 598 80.8
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.0e-273 946.4 549 85.6
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 3.0e-273 944.9 594 79.6
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 6.7e-273 943.7 589 79.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 6.7e-273 943.7 599 80.5
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.5e-272 942.6 566 83.0
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.5e-272 942.6 601 80.0
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-272 942.2 607 79.9
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.6e-272 941.8 598 80.3
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.6e-272 941.8 587 80.1
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 3.3e-272 941.4 601 80.2
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 4.4e-272 941.0 595 80.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 9.7e-272 939.9 595 79.5
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 2.2e-271 938.7 595 79.3
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.7e-271 937.9 597 79.4
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 4.8e-271 937.6 591 79.2
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-270 936.0 579 81.2
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-269 932.9 597 78.4
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.6e-269 931.8 598 78.8
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.6e-269 931.8 598 79.6
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 4.5e-269 931.0 581 81.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 7.7e-269 930.2 599 79.3
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.7e-268 929.1 570 82.6
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.6e-266 921.4 591 78.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.6e-266 921.4 617 78.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 8.0e-266 920.2 595 79.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.2e-264 916.4 597 79.7
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 2.0e-264 915.6 578 80.3
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 4.4e-264 914.4 598 78.3
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.7e-263 911.4 599 76.5
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.0e-261 905.6 625 75.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.5e-261 904.8 596 76.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.2e-257 891.0 629 74.6
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.2e-255 885.6 597 77.1
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.4e-254 882.9 598 73.6
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 9.1e-254 880.2 586 76.5
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.2e-252 875.5 568 79.4
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 5.0e-252 874.4 592 73.8
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-250 869.4 568 78.9
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 8.0e-250 867.1 582 76.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.4e-249 866.3 582 76.3
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.3e-247 859.8 617 72.8
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.4e-246 856.3 655 70.2
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 4.1e-246 854.7 563 77.6
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 7.8e-245 850.5 479 86.8
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.8e-241 839.3 553 75.0
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 8.3e-239 830.5 576 74.3
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-237 826.6 604 73.7
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 7.8e-237 823.9 579 70.8
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 5.8e-232 807.7 548 71.9
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 3.5e-229 798.5 594 70.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.2e-226 790.0 596 68.1
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.1e-226 789.3 463 83.2
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 8.9e-225 783.9 550 70.5
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 7.5e-224 780.8 479 81.8
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 3.2e-222 775.4 532 71.4
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.2e-208 730.3 572 67.1
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.0e-208 729.6 518 72.2
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 7.1e-190 667.9 523 67.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.0e-188 664.1 405 82.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.3e-188 662.9 529 62.2
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 9.1e-169 597.8 410 75.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 5.5e-166 588.6 554 59.4
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.2e-165 587.4 341 86.2
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 9.7e-163 577.8 510 59.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 5.5e-158 562.0 356 78.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 9.4e-158 561.2 548 53.6
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.6e-133 480.7 556 49.1
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 4.0e-132 476.1 257 91.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.9e-98 363.6 255 72.2
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 4.9e-90 336.3 188 82.4
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 6.0e-72 276.2 370 47.8
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 8.2e-69 265.8 210 64.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.3e-54 216.9 198 55.6
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.8e-45 186.8 116 80.2
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 2.6e-43 181.0 165 64.2
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 5.9e-43 179.9 153 64.7
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 8.8e-39 166.0 102 80.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.8e-36 158.3 118 63.6
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.0e-31 142.5 314 32.8
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.1e-28 132.5 76 88.2
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 3.5e-27 127.5 312 33.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 2.0e-19 101.7 84 64.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.5e-17 95.5 58 79.3
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 5.7e-14 83.6 126 44.4
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.7e-13 82.0 43 81.4
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.2e-13 81.6 124 42.7
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 4.9e-13 80.5 111 46.8
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.1e-12 79.3 45 75.6
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 5.4e-12 77.0 47 76.6
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 4.3e-09 67.4 89 46.1
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.1e-08 65.1 94 43.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 6.1e-08 63.5 70 55.7
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 5.2e-07 60.5 112 40.2
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 5.2e-07 60.5 35 74.3


User provided reference genes

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