Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.0e-125 453.4 225 100.0
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 2.9e-99 365.5 216 84.3
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 8.9e-93 344.0 214 81.3
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 3.7e-91 338.6 214 81.3
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 4.4e-76 288.5 215 65.6
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.4e-74 281.6 174 75.3
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.4e-74 281.6 174 75.3
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 5.4e-74 281.6 216 67.1
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 2.7e-73 279.3 214 66.8
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 7.8e-73 277.7 218 65.6
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.3e-72 276.9 223 64.6
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 3.9e-72 275.4 177 71.8
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 5.1e-72 275.0 220 64.5
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 8.6e-72 274.2 213 64.3
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 8.6e-72 274.2 207 66.7
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.5e-71 272.7 220 63.6
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 3.3e-71 272.3 210 64.3
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 5.6e-71 271.6 221 64.3
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 7.3e-71 271.2 166 74.1
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 9.6e-71 270.8 222 62.2
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 1.2e-70 270.4 217 63.6
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 1.6e-70 270.0 221 61.5
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 2.8e-70 269.2 214 62.6
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 3.6e-70 268.9 217 63.6
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 6.2e-70 268.1 166 72.9
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 8.1e-70 267.7 215 63.3
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 8.1e-70 267.7 209 66.0
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.8e-69 266.5 211 65.9
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.4e-69 266.2 220 62.7
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 3.1e-69 265.8 218 62.4
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 4.0e-69 265.4 223 64.1
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 6.8e-69 264.6 204 65.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 8.9e-69 264.2 229 62.0
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 1.5e-68 263.5 214 62.1
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.6e-68 262.7 232 59.1
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 5.8e-68 261.5 209 60.3
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 7.6e-68 261.2 161 73.9
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 2.2e-67 259.6 172 70.3
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.9e-67 259.2 232 60.3
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.9e-67 259.2 224 62.1
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 3.8e-67 258.8 217 63.1
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.1e-66 257.3 159 73.0
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 1.1e-66 257.3 206 63.1
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 1.1e-66 257.3 191 66.0
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.4e-66 256.9 168 70.2
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 2.4e-66 256.1 211 59.7
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 3.2e-66 255.8 210 63.8
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 4.2e-66 255.4 216 63.4
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 4.2e-66 255.4 204 60.8
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 4.2e-66 255.4 214 61.7
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 9.3e-66 254.2 176 68.2
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.6e-65 253.4 208 62.0
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 2.1e-65 253.1 213 62.9
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.7e-65 252.7 213 59.2
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 2.7e-65 252.7 161 70.2
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 6.0e-65 251.5 207 62.3
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 6.0e-65 251.5 214 61.2
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 7.8e-65 251.1 174 68.4
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 7.8e-65 251.1 217 60.8
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.0e-64 250.8 193 61.1
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 1.0e-64 250.8 172 74.4
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 1.3e-64 250.4 215 60.9
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.3e-64 250.4 221 63.3
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 1.3e-64 250.4 206 62.1
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.6e-64 248.1 213 57.7
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.1e-63 247.3 207 62.3
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.1e-63 247.3 174 67.2
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.1e-63 247.3 222 58.1
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-63 246.9 187 64.2
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.5e-63 246.9 160 71.9
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.9e-63 246.5 216 60.2
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.9e-63 246.5 179 65.9
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.9e-63 246.5 177 65.5
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 3.3e-63 245.7 176 65.9
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 4.3e-63 245.4 195 60.5
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 7.3e-63 244.6 218 60.6
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 9.6e-63 244.2 215 60.0
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 9.6e-63 244.2 216 59.7
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 9.6e-63 244.2 215 60.0
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 9.6e-63 244.2 180 66.7
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 2.8e-62 242.7 215 56.7
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 2.8e-62 242.7 215 59.5
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 2.4e-61 239.6 212 55.7
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 2.4e-61 239.6 159 71.1
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.6e-60 236.1 159 69.8
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 5.8e-60 235.0 173 60.7
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.6e-60 234.6 186 62.9
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 7.6e-60 234.6 158 67.7
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.2e-59 233.0 153 69.9
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 4.9e-59 231.9 162 67.3
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 8.4e-59 231.1 148 70.3
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.2e-57 227.3 189 63.5
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.2e-57 227.3 155 67.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.6e-57 226.9 174 63.2
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 2.7e-57 226.1 175 63.4
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.5e-57 225.7 157 68.8
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 3.0e-56 222.6 179 59.8
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 1.9e-55 219.9 188 59.0
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.3e-55 218.8 124 79.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 4.3e-55 218.8 145 66.9
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.6e-54 216.9 154 68.8
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 5.3e-53 211.8 156 64.1
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 2.0e-52 209.9 212 52.8
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 5.1e-48 195.3 154 54.5
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.1e-47 194.1 125 72.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 1.3e-46 190.7 142 59.9
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 4.9e-43 178.7 213 49.3
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 3.3e-39 166.0 111 62.2
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.9e-36 155.2 101 70.3
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.9e-36 155.2 101 70.3
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 2.5e-34 149.8 92 78.3
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 3.5e-33 146.0 159 46.5
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 3.5e-33 146.0 122 57.4
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 4.3e-31 139.0 82 79.3
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.6e-30 137.1 143 55.9
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.8e-29 133.7 77 76.6
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 4.1e-29 132.5 128 45.3
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.2e-28 131.0 93 64.5
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 1.5e-28 130.6 139 51.8
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 3.4e-28 129.4 137 50.4
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.2e-26 121.7 128 53.9
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 7.2e-18 95.1 129 37.2
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 1.1e-07 61.2 142 30.3
Cre03.g208049 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D139805 1.5e-07 60.8 84 35.7
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 1.5e-07 60.8 39 64.1
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 1.3e-06 57.8 51 58.8


User provided reference genes

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